HUGE

Gene/Protein Characteristic Table for KIAA1390

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00226
Accession No. :	AB037811
Description :	Family with sequence similarity 63, member A.
HUGO Gene Name :
Clone Name :	hh08938 [Vector Info]
Flexi ORF Clone :	pF1KA1390
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5222 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3659 bp

Genome contig ID gi89161185r_149132310
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TTATGAGAGATTTTTAAATAAAAACTTTTAATTGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATTCCTGTGTTTTTTTTTTTCTGTGCACCAGTGTTGTCATCAATTCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 149232310 149241870 10 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 505 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAG63364	1.3e-190	99.2	unnamed protein...	Homo sapiens
Q8N5J2	7.1e-179	100.0	Protein FAM63A.	Homo sapiens
Q5R7G8	1.5e-172	96.4	Protein FAM63A.	Pongo abelii
XP_001929700	8e-153	87.5	similar to Y55F...	Sus scrofa
XP_001491201	8e-153	87.3	similar to Y55F...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB032990	2.2e-54	58.2	KIAA1164

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR007518 179 304 PF04424 Protein of unknown function DUF544

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007518	179	304	PF04424	Protein of unknown function DUF544

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GATAGGGTTCAAGGTTGTGTG

Primer_r
: AGCAATGTTTCAGCCTAAGGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GATAGGGTTCAAGGTTGTGTG
Primer_r	: AGCAATGTTTCAGCCTAAGGG
PCR product length	: 116 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3659 bp
Genome contig ID	gi89161185r_149132310
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TTATGAGAGATTTTTAAATAAAAACTTTTAATTGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAATTCCTGTGTTTTTTTTTTTCTGTGCACCAGTGTTGTCATCAATTCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	149232310	149241870	10	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA1390

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information