HUGE

Gene/Protein Characteristic Table for KIAA1273

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00209
Accession No. :	AB033099
Description :	ATPase family AAA domain-containing protein 3B.
HUGO Gene Name :	ATPase family, AAA domain containing 3B (ATAD3B)
Clone Name :	hk09394 [Vector Info]
Flexi ORF Clone :	pF1KA1273
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4334 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO
Ensembl ContigView (Add our DAS server as a DAS source)
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Features of the protein sequence	Description

Length: 606 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAW56192	2.6e-201	100.0	ATPase family, ...	Homo sapiens
Q5T9A4	1.2e-184	99.8	ATPase family A...	Homo sapiens
AAH02542	2.6e-184	99.6	ATPase family, ...	Homo sapiens
Q9NVI7	2.5e-160	93.0	ATPase family A...	Homo sapiens
BAB14787	4.9e-160	100.0	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003959 305 501 PF00004 AAA ATPase

HMMSmart IPR003593 302 435 SM00382 AAA+ ATPase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003959	305	501	PF00004	AAA ATPase
HMMSmart	IPR003593	302	435	SM00382	AAA+ ATPase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 3 VQMQLEALNLLHTLVWARSLCRA 25 SECONDARY 23

2 204 KVTATVAGLTLLAVGVYSAKNAT 226 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	3	VQMQLEALNLLHTLVWARSLCRA	25	SECONDARY	23
2	204	KVTATVAGLTLLAVGVYSAKNAT	226	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAATCACAGCAACGAGACAGC

Primer_r
: ACTTCAACCAACAGCCTACAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GAATCACAGCAACGAGACAGC
Primer_r	: ACTTCAACCAACAGCCTACAC
PCR product length	: 114 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA1273

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information