HUGE

Gene/Protein Characteristic Table for KIAA1244

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00777
Accession No. :	AB033070
Description :	Brefeldin A-inhibited guanine nucleotide-exchange protein 3.
HUGO Gene Name :
Clone Name :	hf00438s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA1244
Source :	Human adult brain
Note :	We replaced hf00438, former representative clones for KIAA1244 with hf00438s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 7932 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2313 bp

Genome contig ID gi89161210f_138518411
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ACTCCAGACTGGGTGACAAGAGTGAAACTCCATCT
Flanking genome sequence
(183220 - 183269)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAGTGAATACTGTATCCCAAAGTATGTTAGTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 f 138618411 138701629 25 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 1872 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_518767	99.8	hypothetical pr...	Pan troglodytes
XP_001095348	98.9	similar to CG59...	Macaca mulatta
BAG10007	100.0	brefeldin A-inh...	synthetic construct
AAL04174	100.0	BIG3 [Homo sapi...	Homo sapiens
Q3UGY8	93.0	Brefeldin A-inh...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR015403 938 1014 PF09324 Protein of unknown function DUF1981

HMMSmart IPR000904 281 493 SM00222 SEC7-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR015403	938	1014	PF09324	Protein of unknown function DUF1981
HMMSmart	IPR000904	281	493	SM00222	SEC7-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 5 TAPALSGPVARTIYYIAAELVRL 27 SECONDARY 23

2 114 GIEACYAAVSCVCTLLGALDELS 136 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	5	TAPALSGPVARTIYYIAAELVRL	27	SECONDARY	23
2	114	GIEACYAAVSCVCTLLGALDELS	136	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTGAGGAGCTGAAGGATGGGG

Primer_r
: TGTCAAGGCTCCTCTCGTTCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTGAGGAGCTGAAGGATGGGG
Primer_r	: TGTCAAGGCTCCTCTCGTTCC
PCR product length	: 135 bp
PCR conditions	: 95 °C15 sec68 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2313 bp
Genome contig ID	gi89161210f_138518411
PolyA signal sequence (None)	+--------+--------+----*----+---- ACTCCAGACTGGGTGACAAGAGTGAAACTCCATCT
Flanking genome sequence (183220 - 183269)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAAAAGTGAATACTGTATCCCAAAGTATGTTAGTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	f	138618411	138701629	25	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA1244

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information