HUGE

Gene/Protein Characteristic Table for KIAA1181

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK02021
Accession No. :	AB033007
Description :	Endoplasmic reticulum-Golgi intermediate compartment protein 1.
HUGO Gene Name :	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 (ERGIC1)
Clone Name :	hf00712a [Vector Info]
Flexi ORF Clone :	pF1KA1181
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 2432 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1420 bp

Genome contig ID gi51511721f_172093937
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TCCAGTGGAAGGATTTTTAAAATTATCTTATGGAT
Flanking genome sequence
(217910 - 217959)
----+----*----+----*----+----*----+----*----+----*
AGCTCAAGTCTCTGCCATTTGTAATTTTTGGCTCTAAGCTCCGATTGGAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 f 172193884 172311845 10 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 336 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001099287	2e-143	99.1	endoplasmic ret...	Macaca mulatta
XP_001063333	9.2e-125	89.4	similar to Endo...	Rattus norvegicus
XP_001066818	5.1e-124	89.1	similar to Endo...	Rattus norvegicus
Q969X5	2.7e-123	100.0	Endoplasmic ret...	Homo sapiens
XP_001499596	5.7e-123	89.6	similar to Endo...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR012936 131 333 PF07970 Protein of unknown function DUF1692

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012936	131	333	PF07970	Protein of unknown function DUF1692

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 72 AIISICCCLFILFLFLSELTGFI 94 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	72	AIISICCCLFILFLFLSELTGFI	94	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TAATCATGCAGCCTCTCAGAC

Primer_r
: ATGGAGGAGCACAGTGTCAAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TAATCATGCAGCCTCTCAGAC
Primer_r	: ATGGAGGAGCACAGTGTCAAG
PCR product length	: 174 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1420 bp
Genome contig ID	gi51511721f_172093937
PolyA signal sequence (None)	+--------+--------+----*----+---- TCCAGTGGAAGGATTTTTAAAATTATCTTATGGAT
Flanking genome sequence (217910 - 217959)	----+--------+--------+--------+--------+----* AGCTCAAGTCTCTGCCATTTGTAATTTTTGGCTCTAAGCTCCGATTGGAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	f	172193884	172311845	10	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA1181

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information