HUGE

Gene/Protein Characteristic Table for KIAA1150

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05278
Accession No. :	AB032976
Description :	Transcriptional repressor p66 beta.
HUGO Gene Name :
Clone Name :	hg02066 [Vector Info]
Flexi ORF Clone :	pF1KA1150
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5051 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3549 bp

Genome contig ID gi89161185r_151945729
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TTCTTGATCCATTTAAAAGGAATTGTACATTGTGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGAAAAAAAAAAAAACCTGAAAAAGAGAAAAAAAAGCCCTAGCCATGGAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 152045729 152067167 10 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 499 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q8WXI9	3.2e-170	100.0	Transcriptional...	Homo sapiens
XP_001144374	4.7e-170	99.8	GATA zinc finge...	Pan troglodytes
BAG52906	1.3e-169	99.6	unnamed protein...	Homo sapiens
XP_001495380	1.5e-169	99.6	GATA zinc finge...	Equus caballus
XP_001929553	1.5e-169	99.6	GATA zinc finge...	Sus scrofa

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000679 326 360 PF00320 Zinc finger

ProfileScan IPR000679 320 350 PS50114 Zinc finger

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000679	326	360	PF00320	Zinc finger
ProfileScan	IPR000679	320	350	PS50114	Zinc finger

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGGGTCAGTTACATAGAAGC

Primer_r
: CACTTTACCATGATTAGGGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAGGGTCAGTTACATAGAAGC
Primer_r	: CACTTTACCATGATTAGGGAG
PCR product length	: 158 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3549 bp
Genome contig ID	gi89161185r_151945729
PolyA signal sequence (None)	+--------+--------+----*----+---- TTCTTGATCCATTTAAAAGGAATTGTACATTGTGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGAAAAAAAAAAAAACCTGAAAAAGAGAAAAAAAAGCCCTAGCCATGGAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	152045729	152067167	10	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA1150

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information