HUGE

Gene/Protein Characteristic Table for KIAA0917

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK02003
Accession No. :	AB020724
Description :	Sec1 family domain-containing protein 1.
HUGO Gene Name :	sec1 family domain containing 1 (SCFD1)
Clone Name :	hk07974s2 [Vector Info]
Flexi ORF Clone :	pF1KA0917
Source :	Human adult brain
Note :	We replaced hk07974, former representative clones for KIAA0917 with hk07974s2. (2003/8/28)

Features of the cloned DNA sequence	Description

Length: 2135 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 186 bp

Genome contig ID gi51511730f_30061276
PolyA signal sequence
(ATTAAA,-23)
+----*----+----*----+----*----+----
TAATATGTATTGATTAAAAGAAACATTTCAGAAAT
Flanking genome sequence
(213478 - 213527)
----+----*----+----*----+----*----+----*----+----*
AAAATTTCAACATTGTTCATTTTCTCTGATAAATCAGAAAGTACTAATAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 14 f 30161276 30274752 25 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 648 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_509885	99.8	vesicle transpo...	Pan troglodytes
Q8WVM8	100.0	Sec1 family dom...	Homo sapiens
AAG50273	99.8	vesicle transpo...	Homo sapiens
AAH17734	99.8	Sec1 family dom...	Homo sapiens
BAD96540	99.8	vesicle transpo...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001619 49 642 PF00995 Sec1-like protein

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001619	49	642	PF00995	Sec1-like protein

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 WLVGAKMAAAAAATAAAAASI 21 PRIMARY 21

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	WLVGAKMAAAAAATAAAAASI	21	PRIMARY	21

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGGAGATGAAGTCAAACCCCG

Primer_r
: ATGTAGTTGCCTCCTCCCACC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 14

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	186 bp
Genome contig ID	gi51511730f_30061276
PolyA signal sequence (ATTAAA,-23)	+--------+--------+----*----+---- TAATATGTATTGATTAAAAGAAACATTTCAGAAAT
Flanking genome sequence (213478 - 213527)	----+--------+--------+--------+--------+----* AAAATTTCAACATTGTTCATTTTCTCTGATAAATCAGAAAGTACTAATAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	14	f	30161276	30274752	25	100.0	Perfect prediction

Primer_f	: TGGAGATGAAGTCAAACCCCG
Primer_r	: ATGTAGTTGCCTCCTCCCACC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0917

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information