HUGE

Gene/Protein Characteristic Table for KIAA0906

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06211
Accession No. :	AB020713
Description :	Nuclear pore membrane glycoprotein 210 precursor.
HUGO Gene Name :	nucleoporin 210kDa (NUP210)
Clone Name :	hk10347 [Vector Info]
Flexi ORF Clone :	pF1KA0906
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4217 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1444 bp

Genome contig ID gi89161205r_13232737
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ACTGGTTTATTTAATAAAGTTCTATGTGATTTTTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAGAGGGTGTGATCGTTGCTGAGATTTCTGTCTGATGGTGATGATTTCTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 r 13332737 13359747 20 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 923 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG10397	99.9	nucleoporin 210...	synthetic construct
BAB84927	99.8	FLJ00172 protei...	Homo sapiens
EAW64151	99.8	nucleoporin 210...	Homo sapiens
Q8TEM1	99.8	Nuclear pore me...	Homo sapiens
EAW64152	99.8	nucleoporin 210...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR003343 113 188 PF02368 Bacterial Ig-like

HMMSmart IPR003343 113 188 SM00635 Bacterial Ig-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003343	113	188	PF02368	Bacterial Ig-like
HMMSmart	IPR003343	113	188	SM00635	Bacterial Ig-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 1 FPAPAKAVVYVSDIQELYIRVVD 23 SECONDARY 23

2 517 ELSGAMVVGDVLCLATVLTSLEG 539 PRIMARY 23

3 558 TGVAVARAVGSVTVYYEVAGHLR 580 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	FPAPAKAVVYVSDIQELYIRVVD	23	SECONDARY	23
2	517	ELSGAMVVGDVLCLATVLTSLEG	539	PRIMARY	23
3	558	TGVAVARAVGSVTVYYEVAGHLR	580	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAAAATGTCCTTGAGATGGCA

Primer_r
: TGATAAGCTGCCATGAAAGTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1444 bp
Genome contig ID	gi89161205r_13232737
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- ACTGGTTTATTTAATAAAGTTCTATGTGATTTTTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAGAGGGTGTGATCGTTGCTGAGATTTCTGTCTGATGGTGATGATTTCTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	r	13332737	13359747	20	99.5	Perfect prediction

Primer_f	: GAAAATGTCCTTGAGATGGCA
Primer_r	: TGATAAGCTGCCATGAAAGTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0906

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information