HUGE

Gene/Protein Characteristic Table for KIAA0878

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00141
Accession No. :	AB020685
Description :	Rho-related BTB domain-containing protein 3.
HUGO Gene Name :	Rho-related BTB domain containing 3 (RHOBTB3)
Clone Name :	hk07361 [Vector Info]
Flexi ORF Clone :	pF1KA0878
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4099 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1928 bp

Genome contig ID gi51511721f_94992808
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CTCCAGCCTGGGTGACAAGAGCGAAACTCCATCTC
Flanking genome sequence
(163756 - 163805)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAACCAAAGTGAAACACTAAAAATTCCCTATAGATAT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 f 95092808 95156562 12 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 687 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_517647	98.8	rho-related BTB...	Pan troglodytes
XP_001090858	98.5	rho-related BTB...	Macaca mulatta
EAW96052	100.0	Rho-related BTB...	Homo sapiens
AAH41337	99.8	Rho-related BTB...	Homo sapiens
O94955	99.8	Rho-related BTB...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB018283	3.5e-13	24.1	KIAA0740
AB018260	2.7e-12	25.0	KIAA0717

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013069 490 594 PF00651 BTB/POZ

HMMSmart IPR000210 330 462 SM00225 BTB/POZ-like

IPR000210 496 594 SM00225 BTB/POZ-like

ProfileScan IPR000210 330 432 PS50097 BTB/POZ-like

IPR000210 496 557 PS50097 BTB/POZ-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013069	490	594	PF00651	BTB/POZ
HMMSmart	IPR000210	330	462	SM00225	BTB/POZ-like
IPR000210	496	594	SM00225	BTB/POZ-like
ProfileScan	IPR000210	330	432	PS50097	BTB/POZ-like
IPR000210	496	557	PS50097	BTB/POZ-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 559 CCPAGIFQAMCLLICAEMYQVSR 581 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	559	CCPAGIFQAMCLLICAEMYQVSR	581	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GGCTGGCAAGGGAGAAATGTG

Primer_r
: AAAGTTAGGCTGGTTAGTCAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1928 bp
Genome contig ID	gi51511721f_94992808
PolyA signal sequence (None)	+--------+--------+----*----+---- CTCCAGCCTGGGTGACAAGAGCGAAACTCCATCTC
Flanking genome sequence (163756 - 163805)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAACCAAAGTGAAACACTAAAAATTCCCTATAGATAT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	f	95092808	95156562	12	99.9	Perfect prediction

Primer_f	: GGCTGGCAAGGGAGAAATGTG
Primer_r	: AAAGTTAGGCTGGTTAGTCAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0878

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information