HUGE

Gene/Protein Characteristic Table for KIAA0818

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK05967
Accession No. :	AB011542
Description :	Multiple epidermal growth factor-like domains 9 precursor.
HUGO Gene Name :
Clone Name :	hj00220 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5507 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4377 bp

Genome contig ID gi89161216r_122302912
PolyA signal sequence
(CATAAA,-21)
+----*----+----*----+----*----+----
CTTTCAGCCCACTTCATAAAAATCTTTGAACTCTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
CATTTATTGGCCATGTATTTTGTTTAAGTTCATTTAAAGAATGTTTTCTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 r 122402912 122461596 5 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 375 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAA32470	2.4e-150	100.0	MEGF9 [Homo sap...	Homo sapiens
Q9H1U4	3.3e-150	100.0	Multiple epider...	Homo sapiens
AAI56249	3.4e-150	100.0	Multiple EGF-li...	synthetic construct
EAW87464	3.5e-150	100.0	hCG28560, isofo...	Homo sapiens
XP_520222	3.7e-149	99.2	EGF-like-domain...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB067494	3.6e-14	33.9	KIAA1907
AB058677	4.3e-11	31.0	KIAA1781
AB011539	3.1e-10	31.5	KIAA0815
AB011105	3.4e-09	32.6	KIAA0533
D63483	8.3e-09	27.9	KIAA0149

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002049 1 24 PF00053 EGF-like

IPR002049 27 71 PF00053 EGF-like

IPR002049 74 119 PF00053 EGF-like

IPR002049 143 168 PF00053 EGF-like

IPR002049 173 222 PF00053 EGF-like

HMMSmart IPR002049 27 71 SM00180 EGF-like

IPR002049 74 119 SM00180 EGF-like

IPR002049 122 170 SM00180 EGF-like

IPR002049 173 222 SM00180 EGF-like

ProfileScan IPR002049 1 26 PS50027 EGF-like

IPR002049 27 73 PS50027 EGF-like

IPR002049 74 121 PS50027 EGF-like

IPR002049 122 172 PS50027 EGF-like

IPR002049 173 224 PS50027 EGF-like

ScanRegExp IPR013032 45 56 PS00022 EGF-like region

IPR002049 45 76 PS01248 EGF-like

IPR002049 90 124 PS01248 EGF-like

IPR002049 144 175 PS01248 EGF-like

IPR002049 195 222 PS01248 EGF-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002049	1	24	PF00053	EGF-like
IPR002049	27	71	PF00053	EGF-like
IPR002049	74	119	PF00053	EGF-like
IPR002049	143	168	PF00053	EGF-like
IPR002049	173	222	PF00053	EGF-like
HMMSmart	IPR002049	27	71	SM00180	EGF-like
IPR002049	74	119	SM00180	EGF-like
IPR002049	122	170	SM00180	EGF-like
IPR002049	173	222	SM00180	EGF-like
ProfileScan	IPR002049	1	26	PS50027	EGF-like
IPR002049	27	73	PS50027	EGF-like
IPR002049	74	121	PS50027	EGF-like
IPR002049	122	172	PS50027	EGF-like
IPR002049	173	224	PS50027	EGF-like
ScanRegExp	IPR013032	45	56	PS00022	EGF-like region
IPR002049	45	76	PS01248	EGF-like
IPR002049	90	124	PS01248	EGF-like
IPR002049	144	175	PS01248	EGF-like
IPR002049	195	222	PS01248	EGF-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 242 ASLTTSVPTPVINSTFTPTTLQT 264 SECONDARY 23

2 286 FNIIILTVIIIVVVLLMGFVGAV 308 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	242	ASLTTSVPTPVINSTFTPTTLQT	264	SECONDARY	23
2	286	FNIIILTVIIIVVVLLMGFVGAV	308	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: nakayama
Primer_f	: ACATGAAACAACTCTGACCAC
Primer_r	: TTATAGGCCGAGCAATTAGGG
PCR product length	: 264 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4377 bp
Genome contig ID	gi89161216r_122302912
PolyA signal sequence (CATAAA,-21)	+--------+--------+----*----+---- CTTTCAGCCCACTTCATAAAAATCTTTGAACTCTT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* CATTTATTGGCCATGTATTTTGTTTAAGTTCATTTAAAGAATGTTTTCTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	r	122402912	122461596	5	99.1	Perfect prediction

Gene/Protein Characteristic Table for KIAA0818

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information