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Order Kazusa clone(s) from : |
| Product ID | ORK04567 |
|---|---|
| Accession No | AB002304 |
| Description | capicua transcriptional repressor |
| Clone name | hg00063 |
| Vector information | |
| cDNA sequence | DNA sequence (4964 bp) Predicted protein sequence (1451 aa) |
| Source | Human adult brain |
| Rouge ID |
mKIAA0306
by Kazusa Mouse cDNA Project
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Length: 4964 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).
| N-terminal truncation | Coding interruption | |
|---|---|---|
| cloned DNA seq | Warning | No warning |
Length: 1451 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment)![]() |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database
(FASTA output,
Multiple alignment)The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | NULL | 935 | 947 | PR01217 | NULL |
| NULL | 969 | 981 | PR01217 | NULL | |
| NULL | 989 | 1010 | PR01217 | NULL | |
| NULL | 1042 | 1059 | PR01217 | NULL | |
| NULL | 1068 | 1093 | PR01217 | NULL | |
| HMMPfam | IPR000910 | 43 | 111 | PF00505 | HMG1/2 (high mobility group) box |
| HMMSmart | IPR000910 | 42 | 112 | SM00398 | HMG1/2 (high mobility group) box |
| ProfileScan | IPR000910 | 43 | 111 | PS50118 | HMG1/2 (high mobility group) box |
| ScanRegExp | IPR002345 | 70 | 83 | PS00213 | Lipocalin |
RT-PCR
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Experimental conditions| Primer_f | CAGAGGGGGTGAGGAGAAAAC |
|---|---|
| Primer_r | GCACCCCTTTTTTCCCCAGAG |
| PCR conditions | 95 °C 30 sec 55 °C 30 sec 72 °C 60 sec 30 cycles![]() |
Chromosome No. 19
Experimental conditions| Panel name | CCR |
|---|---|
| Primer_f | CAGAGGGGGTGAGGAGAAAAC |
| Primer_r | GCACCCCTTTTTTCCCCAGAG |
| PCR product length | 104 bp |
| PCR conditions | 95 °C 15 sec 66 °C 60 sec 30 cycles |