Gene/Protein Characteristic Table for KIAA0797
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Product ID ORK00642
Accession No AB018340
Description SUMO1/sentrin specific peptidase 6, transcript variant 1
Clone name hk06406s1
Vector information
The cDNA fragment was originally inserted at SalI-NotI site ...
cDNA sequence DNA sequence (4254 bp)
Predicted protein sequence (1126 aa)
Flexi ORF Clone FXC00642
Source Human adult brain
Rouge ID mKIAA0797 by Kazusa Mouse cDNA Project
Note We replaced hk06406, former representative clones for KIAA0797 with hk06406s1. (2002/12/27)
Features of the cloned cDNA sequence
Description

Length: 4254 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 871 bp
Genome contig ID gi89161210f_76268917
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ACAGGAATTTAAATAGGAATTTACTATTTTTTTAT
Flanking genome sequence
(213986 - 214035)
----+----*----+----*----+----*----+----*----+----*
AAAGCTTTTGCTATTTTTTCATTGCTCATTTTGTTCTTATTATTTTGATA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 f 76368917 76482901 24 99.6 Perfect prediction
Features of the protein sequence
Description

Length: 1126 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_518592 0 99.1 SUMO1/sentrin s...
Pan troglodytes
AAF04852 0 100.0 SUMO-1-specific...
Homo sapiens
Q9GZR1 0 99.8 Sentrin-specifi...
Homo sapiens
AAG29831 0 99.7 sentrin-specifi...
Homo sapiens
EAW48735 0 99.6 SUMO1/sentrin s...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051494 1e-20 29.6 KIAA1707
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003653 680 1088 PF02902 Peptidase C48
ProfileScan IPR003653 680 1055 PS50600 Peptidase C48
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AGTTCAGAAATAGGACAGTGG
Primer_r GTGGTACTTTTGGATTAGAGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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