Gene/Protein Characteristic Table for KIAA0967
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Product ID ORK00702
Accession No AB023184
Description FERM and PDZ domain containing 1
Clone name hj06404
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4916 bp)
Predicted protein sequence (1578 aa)
Flexi ORF Clone FXC00702
Source Human adult brain
Rouge ID mKIAA0967 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4916 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 135 bp
Genome contig ID gi89161216f_37541052
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TATAGAGTATTCAAATAAACTGCTGCTTAATCTTG
Flanking genome sequence
(195851 - 195900)
----+----*----+----*----+----*----+----*----+----*
GCCTGAGTCATAGAGTTTGGGTTAAAAGCATTCACTTATATTCGTTCAAC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 9 f 37641052 37736901 16 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 1578 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q5SYB0 0 99.9 FERM and PDZ do...
Homo sapiens
AAI14966 0 99.9 FERM and PDZ do...
Homo sapiens
CAI46019 0 99.7 hypothetical pr...
Homo sapiens
XP_520428 0 98.9 FERM and PDZ do...
Pan troglodytes
XP_001114750 0 96.7 similar to FERM...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002314 1e-48 30.3 KIAA0316
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001478 57 132 PF00595 PDZ/DHR/GLGF
HMMSmart IPR001478 67 135 SM00228 PDZ/DHR/GLGF
IPR000299 177 401 SM00295 Band 4.1
ProfileScan IPR001478 57 135 PS50106 PDZ/DHR/GLGF
IPR000299 181 496 PS50057 Band 4.1
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ACAGGGACTTGGAAGCACACC
Primer_r CAGATGTGGCTTTTCCTCGAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 9
Experimental conditions
Panel name GeneBridge 4
Primer_f ACAGGGACTTGGAAGCACACC
Primer_r CAGATGTGGCTTTTCCTCGAC
PCR product length 136 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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