Gene/Protein Characteristic Table for KIAA1938
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK01186
Accession No AB067525
Description synaptic Ras GTPase activating protein 1
Clone name hg00912s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (9768 bp)
Predicted protein sequence (1376 aa)
Flexi ORF Clone FXC01186
Source Human adult brain
Note We replaced hg00912, former representative clones for KIAA1938 with hg00912s1. (2002/12/27)
Features of the cloned cDNA sequence
Description

Length: 9768 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 5635 bp
Genome contig ID gi89161210f_33396013
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
CTTAAAATTTTTTAATAAACTGTGCCCTGAAACCT
Flanking genome sequence
(137285 - 137334)
----+----*----+----*----+----*----+----*----+----*
AAACTGACAGTGGACTGGATTGAGTAATTTGTGTGGGAGAGAATGTGAGA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 f 33495919 33533296 19 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 1376 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96PV0 0 100.0 Ras GTPase-acti...
Homo sapiens
AAI48358 0 100.0 Synaptic Ras GT...
synthetic construct
EDL96865 0 99.0 synaptic Ras GT...
Rattus norvegicus
EDL96867 0 99.0 synaptic Ras GT...
Rattus norvegicus
XP_001256820 0 99.0 synaptic Ras GT...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051530 1.5e-42 49.7 KIAA1743
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001849 235 284 PF00169 Pleckstrin-like
IPR000008 297 377 PF00168 C2 calcium-dependent membrane targeting
IPR001936 497 668 PF00616 Ras GTPase-activating protein
HMMSmart IPR001849 60 286 SM00233 Pleckstrin-like
IPR000008 296 395 SM00239 C2 calcium-dependent membrane targeting
IPR001936 425 762 SM00323 Ras GTPase-activating protein
ProfileScan IPR001849 250 284 PS50003 Pleckstrin-like
IPR001936 476 668 PS50018 Ras GTPase-activating protein
ScanRegExp IPR001936 624 638 PS00509 Ras GTPase-activating protein
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AGACACCATCCACATTGAACC
Primer_r GTGAATCTCCTCCTCGTACTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name GeneBridge 4
Primer_f AGCTGAAGGCTGGAGAGTAAC
Primer_r CACCCCCGATTCCAGTATCTG
PCR product length 123 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp