hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17042480/chunk_1/iprscan-20080502-17042480.nocrc
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Query sequence: KIAA1938
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00616.9.ls GTPase-activator protein for Ras-like GTPase   229.3    7.8e-66   1
PF00616.9.fs GTPase-activator protein for Ras-like GTPase   227.4    2.8e-65   1
PF00169.19.fs PH domain                                       23.0    1.5e-06   1
PF00168.20.fs C2 domain                                       19.6    2.8e-05   1
PF00168.20.ls C2 domain                                       21.5     0.0028   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1     235   284 ..    45    92 .]    23.0  1.5e-06
PF00168.20.ls   1/1     297   377 ..     1    88 []    21.5   0.0028
PF00168.20.fs   1/1     297   377 ..     1    88 []    19.6  2.8e-05
PF00616.9.ls   1/1     497   668 ..     1   200 []   229.3  7.8e-66
PF00616.9.fs   1/1     497   668 ..     1   200 []   227.4  2.8e-65

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 235 to 284: score 23.0, E = 1.5e-06
                   *->sgiqvtkvpdn..krkncFeirt.dretlllqaeseeerkeWvkaiq
                      +++ +++v ++  ++++cFe++t+++ t  +++ s+ er +W++ +q
    KIAA1938   235    EDSIIKPVHSSilGQEFCFEVTTsSG-TKCFACRSAAERDKWIENLQ 280  

                   sair<-*
                   +a++   
    KIAA1938   281 RAVK    284  

PF00168.20.ls: domain 1 of 1, from 297 to 377: score 21.5, E = 0.0028
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikkt.
                      L++++ieA+ Lppk  +      Y++++l+++    +  +k    ++
    KIAA1938   297    LKLWIIEARELPPKK-RY-----YCELCLDDMLY-ARTTSKPRSASg 336  

                   lNPvWNEtFtFevpppdlqetLeieVy.DydrfgrddflGevs<-*
                       W E+F+F+ ++p +   L++ +y+D+d++++ d  G v    
    KIAA1938   337 DTVFWGEHFEFN-NLPAVRA-LRLHLYrDSDKKRKKDKAGYVG    377  

PF00168.20.fs: domain 1 of 1, from 297 to 377: score 19.6, E = 2.8e-05
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikkt.
                      L++++ieA+ Lppk  +      Y++++l+++    +  +k    ++
    KIAA1938   297    LKLWIIEARELPPKK-RY-----YCELCLDDMLY-ARTTSKPRSASg 336  

                   lNPvWNEtFtFevpppdlqetLeieVy.DydrfgrddflGevs<-*
                       W E+F+F+ ++p +   L++ +y+D+d++++ d  G v    
    KIAA1938   337 DTVFWGEHFEFN-NLPAVRA-LRLHLYrDSDKKRKKDKAGYVG    377  

PF00616.9.ls: domain 1 of 1, from 497 to 668: score 229.3, E = 7.8e-66
                   *->llsqlieeEieekt.sdpntlFRgNslatkllsaYlrrvgqeYLkdt
                      +ls+++  E+++   ++++++FR+N+latk++++Y+r++gq+YLkd+
    KIAA1938   497    FLSDMAMSEVDR-FmEREHLIFRENTLATKAIEEYMRLIGQKYLKDA 542  

                   LgplireiveskedlslElDPssklydgeineeeqtgpslpleknlenLr
                   +g++ir + es+e  ++E+DP +k+  +             l ++++nLr
    KIAA1938   543 IGEFIRALYESEE--NCEVDP-IKCTASS------------LAEHQANLR 577  

                   eycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerlsav
                     ce  l+++++S++ +P el++++ ++r ++ ++ +++   +a   +++
    KIAA1938   578 MCCELALCKVVNSHCVFPRELKEVFASWRLRCAERGRED---IA--DRLI 622  

                   ggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvLQ
                   ++ lFLRF +cPAi+sP+lfgl+       +++p+++++R+LtliaKv+Q
    KIAA1938   623 SASLFLRF-LCPAIMSPSLFGLM-------QEYPDEQTSRTLTLIAKVIQ 664  

                   nlan<-*
                   nlan   
    KIAA1938   665 NLAN    668  

PF00616.9.fs: domain 1 of 1, from 497 to 668: score 227.4, E = 2.8e-65
                   *->llsqlieeEieekt.sdpntlFRgNslatkllsaYlrrvgqeYLkdt
                      +ls+++  E+++   ++++++FR+N+latk++++Y+r++gq+YLkd+
    KIAA1938   497    FLSDMAMSEVDR-FmEREHLIFRENTLATKAIEEYMRLIGQKYLKDA 542  

                   LgplireiveskedlslElDPssklydgeineeeqtgpslpleknlenLr
                   +g++ir + es+e  ++E+DP +k+  +             l ++++nLr
    KIAA1938   543 IGEFIRALYESEE--NCEVDP-IKCTASS------------LAEHQANLR 577  

                   eycekfldaIisSvdklPpelryickqiresvekkfpdakqdeaerlsav
                     ce  l+++++S++ +P el++++ ++r ++ ++ +++   +a   +++
    KIAA1938   578 MCCELALCKVVNSHCVFPRELKEVFASWRLRCAERGRED---IA--DRLI 622  

                   ggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvLQ
                   ++ lFLRF +cPAi+sP+lfgl+       +++p+++++R+LtliaKv+Q
    KIAA1938   623 SASLFLRF-LCPAIMSPSLFGLM-------QEYPDEQTSRTLTLIAKVIQ 664  

                   nlan<-*
                   nlan   
    KIAA1938   665 NLAN    668  

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