hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17042480/chunk_1/iprscan-20080502-17042480.nocrc
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Query sequence: KIAA1938
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00323                                                 407.9   5.8e-118   1
SM00239                                                  47.9    1.3e-09   1
SM00233                                                  43.3    3.3e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      60   286 ..     1    82 []    43.3  3.3e-08
SM00239     1/1     296   395 ..     1    92 []    47.9  1.3e-09
SM00323     1/1     425   762 ..     1   390 []   407.9 5.8e-118

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 60 to 286: score 43.3, E = 3.3e-08
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...........
                      + ++ + ++ s+ ++++w +r++++ +++Ll  ++++ ++   ++++
    KIAA1938    60    PSMHRTQYVHSpydRpGWNPRFCIISGNQLLMLDEDeihpllirdrr 106  

                   ..................................................
                   +++++++  +++ + + +++++++++ + +++++++ +++++ + ++ + 
    KIAA1938   107 sessrnkllrrtvsvpvegrphgeheyhlgrsrrksvpggkqysmegapa 156  

                   ..................................................
                    + +++++  +++ +++ ++++++++ +++++ ++  ++ ++ ++++ + 
    KIAA1938   157 apfrpsqgflsrrlkssikrtksqpkldrtssfrqilprfrsadhdrarl 206  

                   ...................kpkgsipLsgcsvre.p.........cFeiv
                    ++ ++++++++  ++++ +   +++L++ s+ ++++++  + + cFe++
    KIAA1938   207 mqsfkeshshesllspssaAEALELNLDEDSIIKpVhssilgqefCFEVT 256  

                   t.drtlllqAeseeereeWvealqsaiaka<-*
                   t+++t  ++++s+ er++W+e lq+a++++   
    KIAA1938   257 TsSGTKCFACRSAAERDKWIENLQRAVKPN    286  

SM00239: domain 1 of 1, from 296 to 395: score 47.9, E = 1.3e-09
                   *->tLtvkiisArnLp...DPYVkvs.......kTkvvkktlsgfNPvWn
                      +L+++ii+Ar Lp+++  Y+++  ++    +T  ++++ sg   +W+
    KIAA1938   296    VLKLWIIEARELPpkkRYYCELClddmlyaRTTSKPRSASGDTVFWG 342  

                   EesetFeFevpp..s.LeieVyDk..........dfiGrvtippnnahqh
                   E   +FeF+  p  + L++ +y ++++++++++   +G vt+p       
    KIAA1938   343 E---HFEFNNLPavRaLRLHLYRDsdkkrkkdkaGYVGLVTVP------- 382  

                   sadglihlsell.ggrh.kl<-*
                          + +l +++ ++++   
    KIAA1938   383 -------VATLAgRHFTeQW    395  

SM00323: domain 1 of 1, from 425 to 762: score 407.9, E = 5.8e-118
                   *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla
                      + +g  +  rlk++y+t  ilp+e Y+e+ e++++++       +l+
    KIAA1938   425    KGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYR------MLC 465  

                   saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt
                   ++le++++v  k+e+A++Lv++++++g++k+fL+++++ Ev+r  +  ++
    KIAA1938   466 AVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHL 515  

                   lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl
                   +FR+N+LatK++e+ym+l+G++YL+++ ++++++++e+++ +cEvDP+K+
    KIAA1938   516 IFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALYESEE-NCEVDPIKC 564  

                   evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic
                                 ++l ++++nL++++e ++++++nS + +P++L++++
    KIAA1938   565 T------------ASSLAEHQANLRMCCELALCKVVNSHCVFPRELKEVF 602  

                   kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvdehpd
                    ++r ++ +r +   +d++ +++s ++FLRF+cPAI+SP+lF+L++e+pd
    KIAA1938   603 ASWRLRCAERGR---EDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPD 649  

                   pttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkqhkdr
                   ++t+RtLtLiAKv+QnLAN+s+     f sKE+++ ++  n+fl+ +++ 
    KIAA1938   650 EQTSRTLTLIAKVIQNLANFSK-----FTSKEDFLGFM--NEFLELEWGS 692  

                   vkdFLdelssvdepsesLvdkveelptkskPVstisgrelsllHslllen
                   + +FL e+s+ d+     +++++e++       +++grels+lH ll+e 
    KIAA1938   693 MQQFLYEISNLDTLT---NSSSFEGY-------IDLGRELSTLHALLWEV 732  

                   gdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<-*
                         ++ +        +  l kl  + r + ++   l+n +   
    KIAA1938   733 -----LPQLS--------KEALLKLGPLPRLLNDISTALRNPN    762  

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