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Order Kazusa clone(s) from :
Japan
||
Other countries |
| Product ID | ORK00037 |
|---|---|
| Accession No | D86984 |
| Description | leucine rich repeat containing 8 family, member B, transcript variant 1 |
| Clone name | fk16230 |
| Vector information |
The cDNA fragment was inserted at the SalI-NotI site of the ...
|
| cDNA sequence | DNA sequence (3615 bp) Predicted protein sequence (823 aa) |
|
HaloTag ORF Clone |
FHC00037
|
| Flexi ORF Clone | FXC00037 |
| Source | Human fetal brain |
| Rouge ID |
mKIAA0231
by Kazusa Mouse cDNA Project
|
| Note | We replaced ha02410, former representative clones for KIAA0231 with fk16230. (2005/08/06) |
Length: 3615 bp Physical map
Restriction map Prediction of protein coding region (GeneMark analysis).
| N-terminal truncation | Coding interruption | |
|---|---|---|
| cloned DNA seq | No warning | No warning |
Integrity of 3' end
| Length of 3'UTR | 333 bp |
|---|---|
| Genome contig ID | gi89161185f_89687489 |
| PolyA signal sequence (None) |
+----*----+----*----+----*----+---- |
| Flanking genome sequence (144037 - 144086) |
----+----*----+----*----+----*----+----*----+----* |
Ensembl ContigView (Add our DAS server as a DAS source)
| Chr | f/r | start | end | exon | identity | class | |
|---|---|---|---|---|---|---|---|
|
| 1 | f | 89787489 | 89831524 | 6 | 99.7 | Perfect prediction |
Length: 823 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database
(FASTA output,
Multiple alignment) |
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR001611 | 630 | 643 | PR00019 | Leucine-rich repeat |
| IPR001611 | 675 | 688 | PR00019 | Leucine-rich repeat | |
| HMMPfam | IPR001611 | 531 | 557 | PF00560 | Leucine-rich repeat |
| IPR001611 | 606 | 627 | PF00560 | Leucine-rich repeat | |
| IPR001611 | 629 | 652 | PF00560 | Leucine-rich repeat | |
| IPR001611 | 654 | 675 | PF00560 | Leucine-rich repeat | |
| IPR001611 | 677 | 698 | PF00560 | Leucine-rich repeat | |
| IPR001611 | 700 | 721 | PF00560 | Leucine-rich repeat | |
| IPR001611 | 769 | 790 | PF00560 | Leucine-rich repeat | |
| HMMSmart | IPR003591 | 529 | 556 | SM00369 | Leucine-rich repeat |
| IPR003591 | 604 | 627 | SM00369 | Leucine-rich repeat | |
| IPR003591 | 629 | 650 | SM00369 | Leucine-rich repeat | |
| IPR003591 | 652 | 674 | SM00369 | Leucine-rich repeat | |
| IPR003591 | 675 | 698 | SM00369 | Leucine-rich repeat | |
| IPR003591 | 699 | 720 | SM00369 | Leucine-rich repeat | |
| IPR003591 | 721 | 744 | SM00369 | Leucine-rich repeat | |
| IPR003591 | 767 | 790 | SM00369 | Leucine-rich repeat |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 5 | LFNFFHCISVLLQGKVMITLTEL | 27 | SECONDARY | 23 | 2 | 283 | IVKVILFVLIITYVPYFLTHITL | 305 | PRIMARY | 23 | 3 | 325 | VYSLAEIFKVLASFYVILVILYG | 347 | PRIMARY | 23 |
|---|
Chromosome No. Experimental conditions| Panel name | |
|---|---|
| Primer_f | - |
| Primer_r | - |
| PCR product length | - |
| PCR conditions | - |
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