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Order Kazusa clone(s) from : |
| Product ID | ORK00961 |
|---|---|
| Accession No | AB075850 |
| Description | glutamyl-tRNA synthetase 2, mitochondrial, transcript variant 1 |
| Clone name | fk07936 |
| Vector information | |
| cDNA sequence | DNA sequence (3110 bp) Predicted protein sequence (519 aa) |
|
HaloTag ORF Clone |
FHC00961
|
| Flexi ORF Clone | FXC00961 |
| Source | Human fetal brain |
| Rouge ID |
mKIAA1970
by Kazusa Mouse cDNA Project
|
Length: 3110 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).
| N-terminal truncation | Coding interruption | |
|---|---|---|
| cloned DNA seq | Warning | No warning |
Ensembl ContigView (Add our DAS server as a DAS source)
| Chr | f/r | start | end | exon | identity | class | |
|---|---|---|---|---|---|---|---|
|
| 16 | r | 23441551 | 23476154 | 10 | 100.0 | Perfect prediction |
Length: 519 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment)![]() |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database
(FASTA output,
Multiple alignment)
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| FPrintScan | IPR000924 | 36 | 48 | PR00987 | Glutamyl/glutaminyl-tRNA synthetase |
| IPR000924 | 50 | 61 | PR00987 | Glutamyl/glutaminyl-tRNA synthetase | |
| IPR000924 | 65 | 78 | PR00987 | Glutamyl/glutaminyl-tRNA synthetase | |
| IPR000924 | 222 | 232 | PR00987 | Glutamyl/glutaminyl-tRNA synthetase | |
| IPR000924 | 238 | 246 | PR00987 | Glutamyl/glutaminyl-tRNA synthetase | |
| HMMPfam | IPR000924 | 32 | 349 | PF00749 | Glutamyl/glutaminyl-tRNA synthetase |
| HMMTigr | IPR004527 | 32 | 519 | TIGR00464 | Glutamyl-tRNA synthetase |
| ScanRegExp | IPR001412 | 39 | 50 | PS00178 | Aminoacyl-tRNA synthetase |
RT-PCR-ELISA
|
Experimental conditions| Primer_f | GTGGAAACAATCTCTGACTGC |
|---|---|
| Primer_r | AATGTGTGAGAAACCAGACCC |
| PCR conditions | 95 °C 30 sec 55 °C 30 sec 72 °C 60 sec 30 cycles![]() |
Chromosome No. 16
Experimental conditions| Panel name | genbank |
|---|---|
| Primer_f | - |
| Primer_r | - |
| PCR product length | - |
| PCR conditions | - |