hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17581463/chunk_1/iprscan-20080502-17581463.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1970
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00464 gltX_bact: glutamyl-tRNA synthetase           457.0     8e-135   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00464   1/1      32   519 .]     1   513 []   457.0   8e-135

Alignments of top-scoring domains:
TIGR00464: domain 1 of 1, from 32 to 519: score 457.0, E = 8e-135
                   *->kvRtRfAPSPTGyLHiGgaRTAlFNYLfArhtgGkFiLRIEDTDleR
                       vR+RfAPSPTG+LH+Gg+RTAl+NY+fA+  +G FiLR+EDTD+ R
    KIAA1970    32    AVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTR 78   

                   nieEaeesIlegLkWLGiswDESvyvgGnYgPyyQSqRldiYkkyikeLL
                    +++a+e+I + L+W Gi++DES+  gG  gPy QSqRl+ Y ++ + LL
    KIAA1970    79 VVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQRLELYAQATEALL 128  

                   eeGlAYrCYCSkEeLErlRkeeiqkanketPrYDgrcRnLheeeienkLa
                   + G AY C+CS+ +LE l+ +e ++ n++tPrYD+rcRn ++e++ +kLa
    KIAA1970   129 KTGAAYPCFCSPQRLELLK-KE-ALRNHQTPRYDNRCRNMSQEQVAQKLA 176  

                   kgippVVRfKiPqeaeisFnDqvrGeItfegseLdnDkRYDDlVIlksDe
                   k+ +p +Rf+  q   ++F+D+v G    e  +  +     D+VI ksD 
    KIAA1970   177 KDPKPAIRFRLEQVV-PAFQDLVYGWNRHEVASVEG-----DPVIMKSD- 219  

                   nPeeaFGsPTYNFAVVvDDyLMkITHViRGEDHiSNTPkQIliYkALGwk
                         G PTY++A+VvDD+ M+I+HV+RG +++ +T+k++l+Y+ALGw+
    KIAA1970   220 ------GFPTYHLACVVDDHHMGISHVLRGSEWLVSTAKHLLLYQALGWQ 263  

                   riPtFaHlplIlnedGKKLSKRdGktatsieqfkeqGYLPEALiNylaLL
                    +P FaHlpl+ln dG KLSKR G  ++++e f ++G+LP  L+  ++  
    KIAA1970   264 -PPHFAHLPLLLNRDGSKLSKRQG--DVFLEHFAADGFLPDSLLDIITNC 310  

                   GWsppdDLAskdqEiFsleElieiFslnrlsKSPAkFDikKLkWlNahYl
                   G          +q   +l Eli++F+l  ++   A+ D++KL  +N  +l
    KIAA1970   311 GSGFAE-----NQMGRTLPELITQFNLTQVTCHSALLDLEKLPEFNRLHL 355  

                   ke.......RiLpdeeLleLldphlkkkesvvktstlneeqewLkeLllL
                   +   +++++R + + +L  L++  +  +    + + ln+    + ++llL
    KIAA1970   356 QRlvsnesqRRQLVGKLQVLVEEAFGCQ--LQNRDVLNPVY--VERILLL 401  

                   lkerlktLkElaelirlfFedkkevdedakkkl.ekfknvkevLealkkk
                     + + +L +l+   +  + ++  v  +     +ek+ +++ +   l++ 
    KIAA1970   402 RQGHICRLQDLVSPVYSYLWTRPAVGRAQLDAIsEKVDVIAKRVLGLLER 451  

                   LqaleewtDaeevksaikqvae.elglKgkkvfmPLRvaltGkghGpdLa
                   +    ++t  + + +++k++ e+ +g K   v++ LR al G+ +Gp+ a
    KIAA1970   452 SSM--SLT-QDMLNGELKKLSEgLEGTKYSNVMKLLRMALSGQQQGPPVA 498  

                   qsleliGsKtesikRLkeAlqFiaa<-*
                   +++ ++G  +e+ +R++           
    KIAA1970   499 EMMLALG-PKEVRERIQ---KVVSS    519  

//