hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17581463/chunk_1/iprscan-20080502-17581463.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1970
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00749.11.ls tRNA synthetases class I (E and Q), cata   408.0   1.3e-119   1
PF00749.11.fs tRNA synthetases class I (E and Q), cata   406.0   5.2e-119   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00749.11.fs   1/1      32   349 ..     1   326 []   406.0 5.2e-119
PF00749.11.ls   1/1      32   349 ..     1   326 []   408.0 1.3e-119

Alignments of top-scoring domains:
PF00749.11.fs: domain 1 of 1, from 32 to 349: score 406.0, E = 5.2e-119
                   *->kVrTRFAPSPTGyLHIGhArtALfNylfAknhnGkfilRieDTDpeR
                       Vr+RFAPSPTG+LH G+ rtAL+Ny fAk+++G filR+eDTD++R
    KIAA1970    32    AVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTR 78   

                   ekpEyeesIledLkWLGikwDESpdvgggygpyyqSdrfdiyykyaeeLI
                    +p+++e+I+++L+W Gi +DESp  gg+ gpy qS+r++ y +  e+L+
    KIAA1970    79 VVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQRLELYAQATEALL 128  

                   ekGlAYvCfctpEeLeeeReeqedpalgSperprYdeecLrlfeEemkkg
                   + G AY+Cfc+p +Le +++e    al  + +prYd +c+++++E+++ +
    KIAA1970   129 KTGAAYPCFCSPQRLELLKKE----ALRNHQTPRYDNRCRNMSQEQVAQK 174  

                   eaeggpatvRfKipmespnyemrDlVrG....rikfepsalhdrvglKwd
                   +a++ ++ +Rf++++  p   + DlV+G +++++       +d+v+ K+d
    KIAA1970   175 LAKDPKPAIRFRLEQVVP--AFQDLVYGwnrhEVASVE---GDPVIMKSD 219  

                   gyPTYdFAvviDDalmgITHvlRgeEhldntpkqiwiyeAlgwevippfi
                   g PTY++A+v+DD+ mgI+HvlRg E+l +t+k++++y+Algw + p f+
    KIAA1970   220 GFPTYHLACVVDDHHMGISHVLRGSEWLVSTAKHLLLYQALGWQP-PHFA 268  

                   HlylrlNldgtkLSKRKlslsVfisqvkgwGdlpeAllnfLrrlGwspeg
                   Hl+l+lN dg kLSKR ++++   +++ ++G+lp  ll  ++  G   ++
    KIAA1970   269 HLPLLLNRDGSKLSKRQGDVF--LEHFAADGFLPDSLLDIITNCGSGFAE 316  

                   irEfftreeliksfdlnrlsksleaFdrkkLdw<-*
                   ++   t+ eli++f+l+ ++   +  d +kL +   
    KIAA1970   317 NQMGRTLPELITQFNLTQVTCHSALLDLEKLPE    349  

PF00749.11.ls: domain 1 of 1, from 32 to 349: score 408.0, E = 1.3e-119
                   *->kVrTRFAPSPTGyLHIGhArtALfNylfAknhnGkfilRieDTDpeR
                       Vr+RFAPSPTG+LH G+ rtAL+Ny fAk+++G filR+eDTD++R
    KIAA1970    32    AVRVRFAPSPTGFLHLGGLRTALYNYIFAKKYQGSFILRLEDTDQTR 78   

                   ekpEyeesIledLkWLGikwDESpdvgggygpyyqSdrfdiyykyaeeLI
                    +p+++e+I+++L+W Gi +DESp  gg+ gpy qS+r++ y +  e+L+
    KIAA1970    79 VVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYQQSQRLELYAQATEALL 128  

                   ekGlAYvCfctpEeLeeeReeqedpalgSperprYdeecLrlfeEemkkg
                   + G AY+Cfc+p +Le +++e    al  + +prYd +c+++++E+++ +
    KIAA1970   129 KTGAAYPCFCSPQRLELLKKE----ALRNHQTPRYDNRCRNMSQEQVAQK 174  

                   eaeggpatvRfKipmespnyemrDlVrG....rikfepsalhdrvglKwd
                   +a++ ++ +Rf++++  p   + DlV+G +++++       +d+v+ K+d
    KIAA1970   175 LAKDPKPAIRFRLEQVVP--AFQDLVYGwnrhEVASVE---GDPVIMKSD 219  

                   gyPTYdFAvviDDalmgITHvlRgeEhldntpkqiwiyeAlgwevippfi
                   g PTY++A+v+DD+ mgI+HvlRg E+l +t+k++++y+Algw + p f+
    KIAA1970   220 GFPTYHLACVVDDHHMGISHVLRGSEWLVSTAKHLLLYQALGWQP-PHFA 268  

                   HlylrlNldgtkLSKRKlslsVfisqvkgwGdlpeAllnfLrrlGwspeg
                   Hl+l+lN dg kLSKR ++++   +++ ++G+lp  ll  ++  G   ++
    KIAA1970   269 HLPLLLNRDGSKLSKRQGDVF--LEHFAADGFLPDSLLDIITNCGSGFAE 316  

                   irEfftreeliksfdlnrlsksleaFdrkkLdw<-*
                   ++   t+ eli++f+l+ ++   +  d +kL +   
    KIAA1970   317 NQMGRTLPELITQFNLTQVTCHSALLDLEKLPE    349  

//