Gene/Protein Characteristic Table for KIAA2005
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Product ID ORK00969
Accession No AB095926
Description sterile alpha motif domain containing 9-like, transcript variant 1
Clone name eg01633
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
cDNA sequence DNA sequence (7122 bp)
Predicted protein sequence (1587 aa)
Flexi ORF Clone FXC00969
Source
Rouge ID mKIAA2005 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 7122 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1162 bp
Genome contig ID gi89161213r_92497304
PolyA signal sequence
(AATAAA,-26)
+----*----+----*----+----*----+----
TGAATATTGAATAAAAAATATATTTATTTATCCAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATCTTTGTATCTCTTTGTAATGTAACTTAGATATTCTGGACTCCAAACCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 7 r 92597304 92615605 5 99.9 Perfect prediction
Features of the protein sequence
Description

Length: 1587 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8IVG5 0 100.0 Sterile alpha m...
Homo sapiens
XP_527818 0 99.4 sterile alpha m...
Pan troglodytes
AAI27119 0 99.8 SAMD9L protein ...
Homo sapiens
XP_001099842 0 95.3 similar to ster...
Macaca mulatta
AAI27118 0 99.8 SAMD9L protein ...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB095925 0 60.3 KIAA2004
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
ProfileScan IPR001660 17 63 PS50105 Sterile alpha motif SAM
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GAGAGATAAAGTGTACCTGTC
Primer_r ATAGACTGGACTGCTGCTGAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 7
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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