Gene/Protein Characteristic Table for KIAA1821
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Product ID ORK06553
Accession No AB058724
Description RAB11 family interacting protein 4 (class II)
Clone name fh12913
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5363 bp)
Predicted protein sequence (609 aa)
Source Human fetal brain
Rouge ID mKIAA1821 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5363 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3531 bp
Genome contig ID gi51511734f_26643079
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GGCAACATAGTGATACCTTGTCTCTACCAAAAGTT
Flanking genome sequence
(243324 - 243373)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAGCTCAAGAACCTGCACGAGGGCCTAAAACAGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 f 26743079 26886401 15 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 609 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q86YS3 1.1e-192 100.0 Rab11 family-in...
Homo sapiens
XP_523772 4.3e-184 100.0 RAB11 family in...
Pan troglodytes
XP_585093 7.9e-183 94.9 similar to RAB1...
Bos taurus
XP_001109342 8.1e-183 99.0 similar to RAB1...
Macaca mulatta
EDM05395 1.4e-177 93.0 rCG34082 [Rattu...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB014565 7.7e-27 39.8 KIAA0665
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
ProfileScan IPR002048 21 56 PS50222 Calcium-binding EF-hand
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTTCAGAATCCTAGCTCCGGG
Primer_r TCAGAAGGATGGAAGACTAAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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