Gene/Protein Characteristic Table for KIAA1749
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Product ID ORK04545
Accession No AB051536
Description cingulin-like 1
Clone name pj02119y1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6373 bp)
Predicted protein sequence (1047 aa)
Source Human brain (hippocampus)
Rouge ID mKIAA1749 by Kazusa Mouse cDNA Project
Note We replaced pj02119, former representative clones for KIAA1749 with pj02119y1. (2003/4/2)
Features of the cloned cDNA sequence
Description

Length: 6373 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3227 bp
Genome contig ID gi51511731f_55418253
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
AGATTTCCTTTCAATAAACGCTGTCACCCAATGGG
Flanking genome sequence
(211954 - 212003)
----+----*----+----*----+----*----+----*----+----*
AATTTTGACTCTCCTGTGATTGTGACTTCTTTGTTTTCTCCAGAGCTTGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 f 55518253 55630205 18 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 1047 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q0VF96 0 99.9 Cingulin-like p...
Homo sapiens
AAH93827 0 99.8 Cingulin-like 1...
Homo sapiens
XP_510437 0 99.2 cingulin-like 1...
Pan troglodytes
AAT37906 0 99.0 paracingulin [H...
Homo sapiens
XP_001092704 0 97.6 similar to cing...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB037740 2.2e-32 33.2 KIAA1319
AB020673 3.8e-14 26.0 KIAA0866
AB111886 1.2e-10 24.6 KIAA2034
AB023217 3.6e-09 24.7 KIAA1000
AB040945 4.1e-08 24.0 KIAA1512
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR002928 809 1003 PF01576 Myosin tail
Experimental conditions
Primer_f CACATTCTCCAAGGACAGCAC
Primer_r TAACACTGAGGAGCTGGCATG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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