Gene/Protein Characteristic Table for KIAA1435
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00833
Accession No AB037856
Description WD repeat and FYVE domain containing 1
Clone name hh13841
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4574 bp)
Predicted protein sequence (415 aa)
Source Human adult brain
Rouge ID mKIAA1435 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4574 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3325 bp
Genome contig ID gi89161199r_224348357
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
AGAAAATGTACACAATAAAACATTCCTTGCTTGTT
Flanking genome sequence
(99953 - 99904)
----+----*----+----*----+----*----+----*----+----*
ACTGTGTTTGCCTAATATCACTTTTGTTGTAGTCAGCCTGGACGTAGGGC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 2 r 224448310 224518261 12 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 415 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8IWB7 1.8e-185 100.0 WD repeat and F...
Homo sapiens
XP_001166904 1e-184 99.5 hypothetical pr...
Pan troglodytes
Q2KIY3 6.4e-184 97.8 WD repeat and F...
Bos taurus
NP_001104749 2.2e-183 97.8 WD repeat and F...
Mus musculus
XP_001915602 4.7e-177 94.9 WD repeat and F...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046863 9.8e-05 33.3 KIAA1643
AB033081 0.00019 26.5 KIAA1255
AB040882 0.00031 23.2 KIAA1449
AB023210 0.00048 25.6 KIAA0993
AB002369 0.00049 24.1 KIAA0371
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001680 199 233 PD000018 WD40 repeat
FPrintScan IPR001680 44 58 PR00320 WD40 repeat
IPR001680 219 233 PR00320 WD40 repeat
IPR001680 386 400 PR00320 WD40 repeat
HMMPfam IPR001680 19 57 PF00400 WD40 repeat
IPR001680 109 143 PF00400 WD40 repeat
IPR001680 194 232 PF00400 WD40 repeat
IPR001680 237 275 PF00400 WD40 repeat
IPR000306 284 358 PF01363 Zinc finger
IPR001680 361 399 PF00400 WD40 repeat
HMMSmart IPR001680 18 57 SM00320 WD40 repeat
IPR001680 61 101 SM00320 WD40 repeat
IPR001680 108 147 SM00320 WD40 repeat
IPR001680 150 188 SM00320 WD40 repeat
IPR001680 193 232 SM00320 WD40 repeat
IPR001680 236 275 SM00320 WD40 repeat
IPR000306 281 358 SM00064 Zinc finger
IPR001680 360 399 SM00320 WD40 repeat
ProfileScan IPR001680 25 56 PS50082 WD40 repeat
IPR001680 25 284 PS50294 WD40 repeat
IPR001680 200 233 PS50082 WD40 repeat
IPR001680 243 284 PS50082 WD40 repeat
IPR000306 286 357 PS50178 Zinc finger
ScanRegExp IPR001680 219 233 PS00678 WD40 repeat
IPR001680 262 276 PS00678 WD40 repeat
IPR001680 386 400 PS00678 WD40 repeat
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f AAAGAAGTTAGTGACCCAGAG
Primer_r ACAGGCTCCTCATTTCTTCTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 2
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp