hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02472320/chunk_1/iprscan-20080502-02472320.nocrc
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Query sequence: KIAA1435
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       119.9    6.7e-33   5
PF00400.22.fs WD domain, G-beta repeat                       112.1    1.3e-30   5
PF01363.12.ls FYVE zinc finger                                89.7      8e-24   1
PF01363.12.fs FYVE zinc finger                                87.9    1.4e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/5      19    57 ..     1    38 []    24.4  0.00038
PF00400.22.fs   1/5      19    57 ..     1    38 []    22.4  2.4e-05
PF00400.22.fs   2/5     109   143 ..     1    34 [.    11.3    0.033
PF00400.22.fs   3/5     194   232 ..     1    38 []    37.9    1e-09
PF00400.22.ls   3/5     194   232 ..     1    38 []    39.9  8.1e-09
PF00400.22.ls   4/5     237   275 ..     1    38 []    22.1   0.0019
PF00400.22.fs   4/5     237   275 ..     1    38 []    20.1  0.00011
PF01363.12.ls   1/1     284   358 ..     1    77 []    89.7    8e-24
PF01363.12.fs   1/1     284   358 ..     1    77 []    87.9  1.4e-23
PF00400.22.ls   5/5     361   399 ..     1    38 []    22.3   0.0016
PF00400.22.fs   5/5     361   399 ..     1    38 []    20.4  9.1e-05

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 5, from 19 to 57: score 24.4, E = 0.00038
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++ ++gH+++Vt+    p     ++++S+D+ti++W    
    KIAA1435    19    PVLLsKIeGHQDAVTAALLIPK-EDGVITASEDRTIRVWL    57   

PF00400.22.fs: domain 1 of 5, from 19 to 57: score 22.4, E = 2.4e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +++ ++gH+++Vt+    p     ++++S+D+ti++W    
    KIAA1435    19    PVLLsKIeGHQDAVTAALLIPK-EDGVITASEDRTIRVWL    57   

PF00400.22.fs: domain 2 of 5, from 109 to 143: score 11.3, E = 0.033
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgti<-*
                       + ++++++H++ V+++ fs    ++++s ++D+++   
    KIAA1435   109    MNFIkTYpAHQNRVSAIIFSLA-TEWVISTGHDKCV    143  

PF00400.22.fs: domain 3 of 5, from 194 to 232: score 37.9, E = 1e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++++l+gH+++V c+ ++p  ++ll+sg +D++i +Wd   
    KIAA1435   194    CSVItTLkGHEGSVACLWWDPI-QRLLFSGASDNSIIMWD    232  

PF00400.22.ls: domain 3 of 5, from 194 to 232: score 39.9, E = 8.1e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      + ++++l+gH+++V c+ ++p  ++ll+sg +D++i +Wd   
    KIAA1435   194    CSVItTLkGHEGSVACLWWDPI-QRLLFSGASDNSIIMWD    232  

PF00400.22.ls: domain 4 of 5, from 237 to 275: score 22.1, E = 0.0019
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +  l+gH + V ++++ +   ++l+s+S+Dg i +W+   
    KIAA1435   237    KGRTlLLqGHHDKVQSLCYLQL-TRQLVSCSSDGGIAVWN    275  

PF00400.22.fs: domain 4 of 5, from 237 to 275: score 20.1, E = 0.00011
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +  l+gH + V ++++ +   ++l+s+S+Dg i +W+   
    KIAA1435   237    KGRTlLLqGHHDKVQSLCYLQL-TRQLVSCSSDGGIAVWN    275  

PF01363.12.ls: domain 1 of 1, from 284 to 358: score 89.7, E = 8e-24
                   *->phWvpDeevsnCmrCgkpFtk..........ltkRrHHCRaCGrifC
                      p+W+ +++   C  C++pF+++ ++  ++++l  R+HHCR CG+ +C
    KIAA1435   284    PQWLESDS---CQKCEQPFFWnikqmwdtktLGLRQHHCRKCGQAVC 327  

                   gsCssktvllpylgiaallkndviekpvRVCdsCydrlnk<-*
                   g+Cssk++++p +g          e +vRVCdsCyd+ ++   
    KIAA1435   328 GKCSSKRSSYPVMGF---------EFQVRVCDSCYDSIKD    358  

PF01363.12.fs: domain 1 of 1, from 284 to 358: score 87.9, E = 1.4e-23
                   *->phWvpDeevsnCmrCgkpFtk..........ltkRrHHCRaCGrifC
                      p+W+ +++   C  C++pF+++ ++  ++++l  R+HHCR CG+ +C
    KIAA1435   284    PQWLESDS---CQKCEQPFFWnikqmwdtktLGLRQHHCRKCGQAVC 327  

                   gsCssktvllpylgiaallkndviekpvRVCdsCydrlnk<-*
                   g+Cssk++++p +g          e +vRVCdsCyd+ ++   
    KIAA1435   328 GKCSSKRSSYPVMGF---------EFQVRVCDSCYDSIKD    358  

PF00400.22.ls: domain 5 of 5, from 361 to 399: score 22.3, E = 0.0016
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ + +++  ++ ++ ++ +   + l+++++ D+ +kiWd   
    KIAA1435   361    RTSLaTFhEGKHNISHMSMDIA-RGLMVTCGTDRIVKIWD    399  

PF00400.22.fs: domain 5 of 5, from 361 to 399: score 20.4, E = 9.1e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ + +++  ++ ++ ++ +   + l+++++ D+ +kiWd   
    KIAA1435   361    RTSLaTFhEGKHNISHMSMDIA-RGLMVTCGTDRIVKIWD    399  

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