# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh13841.fasta.huge -Q ../query/KIAA1435.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1435, 415 aa vs ./tmplib.24314 library 1987090 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.0209+/-0.00584; mu= 24.6991+/- 0.400 mean_var=117.3509+/-28.880, 0's: 0 Z-trim: 20 B-trim: 132 in 1/39 Lambda= 0.118394 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1643 ( 993 res) hh10131(revised) ( 993) 183 43.0 9.8e-05 KIAA1255 ( 1232 res) hh14633s1 (1232) 178 42.3 0.00019 KIAA1449 ( 680 res) fk04105 ( 680) 172 40.7 0.00031 KIAA0993 ( 1556 res) bf03014 (1556) 171 41.3 0.00048 KIAA0371 ( 1203 res) hh00252 (1203) 170 40.9 0.00049 KIAA1589 ( 816 res) fj08951 ( 816) 163 39.4 0.00097 KIAA0647 ( 1195 res) hj03819s1 (1195) 154 38.2 0.0032 KIAA0321 ( 1542 res) hg00426 (1542) 153 38.2 0.004 KIAA1362 ( 699 res) fj02381 ( 699) 147 36.5 0.0061 KIAA0305 ( 1547 res) hg00042 (1547) 149 37.6 0.0064 KIAA1537 ( 619 res) fj02581s1 ( 619) 146 36.2 0.0066 >>KIAA1643 ( 993 res) hh10131(revised) (993 aa) initn: 182 init1: 159 opt: 183 Z-score: 176.9 bits: 43.0 E(): 9.8e-05 Smith-Waterman score: 194; 33.333% identity (57.778% similar) in 90 aa overlap (267-353:901-979) 240 250 260 270 280 290 KIAA14 KGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWLESDSC---Q :.. .:. . : . :. :.:. ...: KIAA16 ETDDKEKLRKVTQTLRSAALEDCALCQETLSSSELAAKTRDGDFEDPPEWVPDEACGFCT 880 890 900 910 920 930 300 310 320 330 340 350 KIAA14 KCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCY :. :: :. :.::::.::. :..:::. . : .: :::: :: KIAA16 ACKAPF-----------TVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCY 940 950 960 970 360 370 380 390 400 410 KIAA14 DSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFS KIAA16 MFHVTPFYSDKAGL 980 990 >>KIAA1255 ( 1232 res) hh14633s1 (1232 aa) initn: 172 init1: 142 opt: 178 Z-score: 171.7 bits: 42.3 E(): 0.00019 Smith-Waterman score: 190; 26.515% identity (55.303% similar) in 132 aa overlap (238-354:1107-1224) 210 220 230 240 250 260 KIAA14 ACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQ--LVSC : :.:: .. .:: ..:. .. KIAA12 GQYGKENAAAIFDLFLECMPGYPLDKPDADGSTVLLLAYMKGNANLCR-AIVRSGARLGV 1080 1090 1100 1110 1120 1130 270 280 290 300 310 KIAA14 SSDGGIAVWNMDVSREE-----------APQWLESDSCQKCEQPFFWNIKQMWDTKTLGL ... :. ..:..:. .. : : ... : .: : . KIAA12 NNNQGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGSYCYECTARF-----------GVTT 1140 1150 1160 1170 1180 320 330 340 350 360 370 KIAA14 RQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQ--VRVCDSCYDSIKDEDRTSLATFHEGKH :.::::.::. .: :::.:. :.. :... ::::. :.: KIAA12 RKHHCRHCGRLLCHKCSTKE--IPIIKFDLNKPVRVCNICFDVLTLGGVS 1190 1200 1210 1220 1230 380 390 400 410 KIAA14 NISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH >>KIAA1449 ( 680 res) fk04105 (680 aa) initn: 156 init1: 97 opt: 172 Z-score: 167.8 bits: 40.7 E(): 0.00031 Smith-Waterman score: 173; 23.153% identity (55.665% similar) in 203 aa overlap (87-280:47-246) 60 70 80 90 100 110 KIAA14 LKRDSGQYWPSIYHTMASPCSAMAYHHDSRRIFVGQDNGAVMEFHVSEDFNKMN-FIKTY :.:.. .. . . :.. .:.. .: .. KIAA14 KVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQ--HKQDPYIASM 20 30 40 50 60 70 120 130 140 150 160 170 KIAA14 PAHQNRVSAIIFSLATEWVISTGHDKCVS-WMCTRSGNMLGRHFFTSWASCLQYDFDTQY : . :. :.. . .::.. : :. : .. : . .... : : : . KIAA14 EHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKEL 80 90 100 110 120 130 180 190 200 210 220 KIAA14 AFVGDYSGQI------TLLKLEQNTCSVITT-LKGHEGSVACLWWDPIQRLLFSGASDNS . . . :: :: : .. .: :. :.:.. :. : . . .. ::.... KIAA14 VASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKV 140 150 160 170 180 190 230 240 250 260 270 280 KIAA14 IIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWL . .:: .. . :.:: :.:..: . : .: :::: : .:.. .: KIAA14 LRVWD-PRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRV 200 210 220 230 240 250 290 300 310 320 330 340 KIAA14 ESDSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVR KIAA14 HDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPP 260 270 280 290 300 310 >>KIAA0993 ( 1556 res) bf03014 (1556 aa) initn: 341 init1: 150 opt: 171 Z-score: 164.6 bits: 41.3 E(): 0.00048 Smith-Waterman score: 193; 25.551% identity (48.018% similar) in 227 aa overlap (144-359:1351-1546) 120 130 140 150 160 170 KIAA14 TYPAHQNRVSAIIFSLATEWVISTGHDKCVSWMCTRSGNMLGRHFFTSWASCLQYDFDTQ .: :: ::. .:. :.. :. : KIAA09 QSISQDPKDTPSQPSSTSHRPRAASCRATAAW-CTDSGSDDSRR----WSDQLSLDEKDG 1330 1340 1350 1360 1370 180 190 200 210 220 KIAA14 YAFVGDYSGQIT------LLKLEQNTCSVITTLKGHEGSVACLWWDPIQRLLFSGASDNS . ::. :: : . . : : . . . : :. ..:.: .. KIAA09 FIFVNYSEGQTRAHLQGPLSHPHPNPIEVRNYSRLKPG----YRWE--RQLVFR----SK 1380 1390 1400 1410 1420 230 240 250 260 270 280 KIAA14 IIMWDIGGRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWNMD--VSREEAPQ . : :: ..: .: .: . ... .: : . :... .: : . KIAA09 LTMHTAFDRKD-----NAHPAEVTALGISKDHSRILVGDSRGRVFSWSVSDQPGRSAADH 1430 1440 1450 1460 1470 1480 290 300 310 320 330 340 KIAA14 WLES---DSCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGF :... :::. : : .: :.::::.::: : ::: .: . . KIAA09 WVKDEGGDSCSGCSVRF-----------SLTERRHHCRNCGQLFCQKCSRFQSEIKRLKI 1490 1500 1510 1520 350 360 370 380 390 400 KIAA14 EFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTP ::::..:: ... : KIAA09 SSPVRVCQNCYYNLQHERGSEDGPRNC 1530 1540 1550 >>KIAA0371 ( 1203 res) hh00252 (1203 aa) initn: 142 init1: 142 opt: 170 Z-score: 164.4 bits: 40.9 E(): 0.00049 Smith-Waterman score: 186; 24.060% identity (50.752% similar) in 266 aa overlap (116-356:937-1183) 90 100 110 120 130 140 KIAA14 RRIFVGQDNGAVMEFHVSEDFNKMNFIKTYPAHQNRVSAIIFSLATEWVISTGHDKCVSW : .::.: .:.: . : . .:.. KIAA03 TSLGSTLSLTRSPCALPLAECKEGLVCNGAPETENRASEQPPGLSTLQMYPTPNGHCANG 910 920 930 940 950 960 150 160 170 180 190 200 KIAA14 MCTRSGNMLGRHFFTSWASCLQ---YDFDTQYAFVGDYSGQITLLKLEQNTCSVITTLKG :: . :.:.. : :: . .. . .. .. ..::. . : : .. KIAA03 EAGRSKDSLSRQL--SAMSCSSAHLHSRNLHHKWLHSHSGR------PSATSSPDQPSRS 970 980 990 1000 1010 210 220 230 240 KIAA14 H-EGSVACLWWDPIQ---RLLFSGASDNSIIM----WDIGGRKGRTLLLQGHH------D : . . .. : :: : . :: ... . .. .: : .. : : KIAA03 HLDDDGMSVYTDTIQQRLRQIESGHQQEVETLKKQVQELKSRLESQYLTSSLHFNGDFGD 1020 1030 1040 1050 1060 1070 250 260 270 280 290 300 KIAA14 KVQSL--CYLQLTRQLVS-CSSDG-GIAVWN-MDVSREEAPQWLESD---SCQKCEQPFF .: :. .: .. .: ::.. . : :. .: . : .:: . : :.. : KIAA03 EVTSIPDSESNLDQNCLSRCSTEIFSEASWEQVDKQDTEMTRWLPDHLAAHCYACDSAF- 1080 1090 1100 1110 1120 1130 310 320 330 340 350 360 KIAA14 WNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDED : :. :.::::.::.. :..: ... : . . ::: :::.:. KIAA03 W----------LASRKHHCRNCGNVFCSSCCNQKVPVPSQQLFEPSRVCKSCYSSLHPTS 1140 1150 1160 1170 1180 370 380 390 400 410 KIAA14 RTSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH KIAA03 SSIDLELDKPIAATSN 1190 1200 >>KIAA1589 ( 816 res) fj08951 (816 aa) initn: 211 init1: 154 opt: 163 Z-score: 159.0 bits: 39.4 E(): 0.00097 Smith-Waterman score: 183; 33.858% identity (51.969% similar) in 127 aa overlap (238-355:584-696) 210 220 230 240 250 260 KIAA14 ACLWWDPIQRLLFSGASDNSIIMWDIGGRKGRTLLLQGHHDKVQSLCY-LQLTRQLVSCS : .:. ... .: : ... : :: KIAA15 GVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSEL 560 570 580 590 600 610 270 280 290 300 310 KIAA14 SDG---GIAVWNMDVSREEAPQ-WLESD---SCQKCEQPFFWNIKQMWDTKTLGLRQHHC : : ... : : . :: : .. ::.:: : : ::: ::: KIAA15 SLGPTKAVTSWLTD---QIAPAYWRPNSQILSCNKCATSFKDN-----DTK------HHC 620 630 640 650 320 330 340 350 360 370 KIAA14 RKCGQAVCGKCSSKRSSYPVMGF-EFQVRVCDSCYDSIKDEDRTSLATFHEGKHNISHMS : ::.. : .:::: : :. :::::.::.. KIAA15 RACGEGFCDSCSSKTRPVPERGWGPAPVRVCDNCYEARNVQLAVTEAQVDDEGGTLIARK 660 670 680 690 700 710 380 390 400 410 KIAA14 MDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH KIAA15 VGEAVQNTLGAVVTAIDIPLGLVKDAARPAYWVPDHEILHCHNCRKEFSIKLSKHHCRAC 720 730 740 750 760 770 >>KIAA0647 ( 1195 res) hj03819s1 (1195 aa) initn: 130 init1: 130 opt: 154 Z-score: 149.6 bits: 38.2 E(): 0.0032 Smith-Waterman score: 161; 29.897% identity (54.639% similar) in 97 aa overlap (265-357:1092-1174) 240 250 260 270 280 290 KIAA14 GRKGRTLLLQGHHDKVQSLCYLQLTRQLVSCSSDGGIAVWN-MDVSREEAPQWLE---SD : :. : :. .: .. :. .:. .. KIAA06 PPMDYEDDFTCLKESDGSDTEDFGSDHSEDCLSE---ASWEPVDKKETEVTRWVPDHMAS 1070 1080 1090 1100 1110 300 310 320 330 340 350 KIAA14 SCQKCEQPFFWNIKQMWDTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCD : .:. : : .: :.::::.::.. :. : . : . . : ::. KIAA06 HCYNCDCEF-------WLAK----RRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLVCN 1120 1130 1140 1150 1160 360 370 380 390 400 410 KIAA14 SCYDSIKDEDRTSLATFHEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLAT :::. :. KIAA06 SCYEHIQVSRARELMSQQLKKPIATASS 1170 1180 1190 >>KIAA0321 ( 1542 res) hg00426 (1542 aa) initn: 185 init1: 118 opt: 153 Z-score: 148.0 bits: 38.2 E(): 0.004 Smith-Waterman score: 162; 39.726% identity (61.644% similar) in 73 aa overlap (285-353:811-871) 260 270 280 290 300 310 KIAA14 YLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWL--ESDS-CQKCEQPFFWNIKQMWDTKT ::. :..: :. : . : : KIAA03 IHSPSLRERSFPPTQPSQEFVPPATPPARHQWVPDETESICMVCCREHF----------T 790 800 810 820 830 320 330 340 350 360 370 KIAA14 LGLRQHHCRKCGQAVCGKCSSKRSSYPVMGF-EFQVRVCDSCYDSIKDEDRTSLATFHEG . :.::::.::. ::..::.:. . : : : .::::.:: KIAA03 MFNRRHHCRRCGRLVCSSCSTKK--MVVEGCRENPARVCDQCYSYCNKDVPEEPSEKPEA 840 850 860 870 880 380 390 400 410 KIAA14 KHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH KIAA03 LDSSKSESPPYSFVVRVPKADEVEWILDLKEEENELVRSEFYYEQAPSASLCIAILNLHR 890 900 910 920 930 940 >>KIAA1362 ( 699 res) fj02381 (699 aa) initn: 146 init1: 116 opt: 147 Z-score: 144.6 bits: 36.5 E(): 0.0061 Smith-Waterman score: 156; 30.488% identity (53.659% similar) in 82 aa overlap (282-360:547-616) 260 270 280 290 300 KIAA14 SLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWL---ESDSCQKCEQPFFWNIKQMWD .:: :. .. :. : . : KIAA13 YAKKRITFCPSRSLDEADSENKEEVSPLGSKAPIWIPDTRATMCMICTSEF--------- 520 530 540 550 560 310 320 330 340 350 360 KIAA14 TKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATFH :: :.:::: ::. :: :::.. . . . .:::. :.. .. : KIAA13 --TLTWRRHHCRACGKIVCQACSSNKYGLDYLKNQ-PARVCEHCFQELQKLDHQHSPRIG 570 580 590 600 610 620 370 380 390 400 410 KIAA14 EGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH KIAA13 SPGNHKSPSSALSSVLHSIPSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKH 630 640 650 660 670 680 >>KIAA0305 ( 1547 res) hg00042 (1547 aa) initn: 161 init1: 98 opt: 149 Z-score: 144.3 bits: 37.6 E(): 0.0064 Smith-Waterman score: 163; 30.380% identity (56.962% similar) in 79 aa overlap (281-356:747-812) 260 270 280 290 300 KIAA14 QSLCYLQLTRQLVSCSSDGGIAVWNMDVSREEAPQWL---ESDSCQKCEQPFFWNIKQMW .. : :. :. .:..:. : KIAA03 ESNSEGGSSFVTANEDSVPENTCKEGLVLGQKQPTWVPDSEAPNCMNCQVKF-------- 720 730 740 750 760 310 320 330 340 350 360 KIAA14 DTKTLGLRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQVRVCDSCYDSIKDEDRTSLATF :. :.:::: ::.. :: : ... . . : ..::: ::..: KIAA03 ---TFTKRRHHCRACGKVFCGVCCNRKCKLQYL--EKEARVCVVCYETISKAQAFERMMS 770 780 790 800 810 820 370 380 390 400 410 KIAA14 HEGKHNISHMSMDIARGLMVTCGTDRIVKIWDMTPVVGCSLATGFSPH KIAA03 PTGSNLKSNHSDECTTVQPPQENQTSSIPSPATLPVSALKQPGVEGLCSKEQKRVWFADG 830 840 850 860 870 880 415 residues in 1 query sequences 1987090 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:22 2008 done: Thu Dec 18 15:22:22 2008 Total Scan time: 0.390 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]