hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02472320/chunk_1/iprscan-20080502-02472320.nocrc
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Query sequence: KIAA1435
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 141.9    6.6e-38   7
SM00064                                                  92.4    5.4e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      18    57 ..     1    46 []    28.6  0.00088
SM00320    2/7      61   101 ..     1    46 []     4.5       96
SM00320    3/7     108   147 ..     1    46 []    15.0      2.1
SM00320    4/7     150   188 ..     1    46 []     2.0  2.4e+02
SM00320    5/7     193   232 ..     1    46 []    41.4  1.2e-07
SM00320    6/7     236   275 ..     1    46 []    27.4   0.0019
SM00064    1/1     281   358 ..     1    81 []    92.4  5.4e-23
SM00320    7/7     360   399 ..     1    46 []    23.0    0.041

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 18 to 57: score 28.6, E = 0.00088
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + ll++++gH++  +Vt+    p        + ++++s+D+tir+W
    KIAA1435    18    RpVLLSKIEGHQD--AVTAALLIPKE------DGVITASeDRTIRVW 56   

                   d<-*
                       
    KIAA1435    57 L    57   

SM00320: domain 2 of 7, from 61 to 101: score 4.5, E = 96
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++   ++  Ht  sp++++a+++d+      +++++g ++g +  +
    KIAA1435    61    SgQYWPSIY-HTMASPCSAMAYHHDS------RRIFVGQdNGAVMEF 100  

                   d<-*
                   +   
    KIAA1435   101 H    101  

SM00320: domain 3 of 7, from 108 to 147: score 15.0, E = 2.1
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + ++t+++H++  +V+++ fs         ++++s ++D+++   
    KIAA1435   108    KmNFIKTYPAHQN--RVSAIIFSLAT------EWVISTGhDKCVSWM 146  

                   d<-*
                       
    KIAA1435   147 C    147  

SM00320: domain 4 of 7, from 150 to 188: score 2.0, E = 2.4e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ l      t+  + ++++++ d       ++ ++g+  g+i l 
    KIAA1435   150    SgNMLGRHF-FTS--WASCLQYDFDT------QYAFVGDySGQITLL 187  

                   d<-*
                   +   
    KIAA1435   188 K    188  

SM00320: domain 5 of 7, from 193 to 232: score 41.4, E = 1.2e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t +++ tlkgH+g  +V ++ ++p        +ll+sg +D++i +W
    KIAA1435   193    TcSVITTLKGHEG--SVACLWWDPIQ------RLLFSGAsDNSIIMW 231  

                   d<-*
                   d   
    KIAA1435   232 D    232  

SM00320: domain 6 of 7, from 236 to 275: score 27.4, E = 0.0019
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +  +  l+gH +   V s+++ +        ++l+s+s+Dg i +W
    KIAA1435   236    RkGRTLLLQGHHD--KVQSLCYLQLT------RQLVSCSsDGGIAVW 274  

                   d<-*
                   +   
    KIAA1435   275 N    275  

SM00064: domain 1 of 1, from 281 to 358: score 92.4, E = 5.4e-23
                   *->etaphWvpDeeasnClmnCgkeFtl..........vtrRrHHCRnCG
                      e+ap+W ++   ++C ++C+++F ++ ++  +++++  R+HHCR+CG
    KIAA1435   281    EEAPQWLES---DSC-QKCEQPFFWnikqmwdtktLGLRQHHCRKCG 323  

                   rifCskCsskkaplpklgkekkngknedftpvRVCdsCyerlsk<-*
                   + +C+kCssk++ +p +g e         ++vRVCdsCy++++    
    KIAA1435   324 QAVCGKCSSKRSSYPVMGFE---------FQVRVCDSCYDSIKD    358  

SM00320: domain 7 of 7, from 360 to 399: score 23.0, E = 0.041
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ l+t++  ++   +++++ +          l++++++D+ +++W
    KIAA1435   360    DrTSLATFHEGKH--NISHMSMDIAR------GLMVTCGtDRIVKIW 398  

                   d<-*
                   d   
    KIAA1435   399 D    399  

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