Gene/Protein Characteristic Table for KIAA0951
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Product ID ORK05627
Accession No AB023168
Description neuroligin 4, Y-linked
Clone name hj05306
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4935 bp)
Predicted protein sequence (679 aa)
Source Human adult brain
Features of the cloned cDNA sequence
Description

Length: 4935 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2706 bp
Genome contig ID gi89161220f_15044026
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
AAATATCACACTATTTTCTAATGCTTTGTACAAAC
Flanking genome sequence
(421218 - 421267)
----+----*----+----*----+----*----+----*----+----*
AATTATGCATCTGTTCTTTCTTGGTAGGTGGAATATTTTATTTACTTTTG
Features of the protein sequence
Description

Length: 679 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG58145 0 100.0 unnamed protein...
Homo sapiens
ACL51670 0 98.4 neuroligin 4 Y-...
Macaca mulatta
XP_001144796 0 98.2 similar to NLGN...
Pan troglodytes
XP_001144736 0 98.2 similar to NLGN...
Pan troglodytes
XP_520915 0 98.1 similar to NLGN...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB033086 0 98.8 KIAA1260
AB040913 3.9e-197 75.7 KIAA1480
AB028993 9.3e-116 75.0 KIAA1070
AB037787 1.3e-112 62.2 KIAA1366
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
FPrintScan IPR000460 299 313 PR01090 Neuroligin
IPR000460 402 423 PR01090 Neuroligin
IPR000460 432 450 PR01090 Neuroligin
IPR000460 532 561 PR01090 Neuroligin
HMMPfam IPR002018 1 453 PF00135 Carboxylesterase

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 538 LSVTIAVGASLLFLNILAFAAL 559 PRIMARY 22
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTCTGCAAGCAATGTATGACC
Primer_r TAGACAGACAAAACCAGCATG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name GeneBridge 4
Primer_f TTCTGCAAGCAATGTATGACC
Primer_r TAGACAGACAAAACCAGCATG
PCR product length 103 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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