Gene/Protein Characteristic Table for KIAA0792
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00640
Accession No AB018335
Description transmembrane protein 63A
Clone name hk05691
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4074 bp)
Predicted protein sequence (828 aa)
Flexi ORF Clone FXC00640
Source Human adult brain
Rouge ID mKIAA0792 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4074 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1400 bp
Genome contig ID gi89161185r_223999863
PolyA signal sequence
(AGTAAA,-19)
+----*----+----*----+----*----+----
TTCCAGCCGCTTTTAGAGTAAAGTCGTTTATCATC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAGCCATGTTGCTTACCACACGGAGTTGGGGGTTGGGGAGTGAGCTTGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 224099863 224136671 25 99.6 Perfect prediction
Features of the protein sequence
Description

Length: 828 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG09849 0 100.0 transmembrane p...
synthetic construct
O94886 0 99.9 Transmembrane p...
Homo sapiens
BAG51078 0 99.4 unnamed protein...
Homo sapiens
Q5R826 0 98.6 Transmembrane p...
Pongo abelii
XP_001089796 0 96.0 similar to tran...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB007958 6.2e-42 100.0 KIAA0489
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR003864 356 790 PF02714 Protein of unknown function DUF221

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 67 TFGGIPTVLLIDVSCFLFLILVF 89 PRIMARY 23
2 166 HIIFLLVVVSFLSLCVILPVNLS 188 PRIMARY 23
3 212 DLLWLHTIFAVIYLFFTVGFMRH 234 PRIMARY 23
4 446 INFTLFLGLFFLTTPSIILSTMD 468 SECONDARY 23
5 487 FFPTLLLWSFSALLPSIVYYSTL 509 PRIMARY 23
6 528 YIFLIFMVLILPSLGLTSLDFFF 550 PRIMARY 23
7 583 ASAFIGNGMELLRLPGLILYTFR 605 SECONDARY 23
8 635 MLCVFTVIVAYSITCPIIAPFGL 657 PRIMARY 23
9 689 VNQALAAPILCLFWLYFFSFLRL 711 PRIMARY 23
10 717 ATLFTFLVLLLTILVCLAHTCFG 739 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CAGCCTCTCTCACCTCTTCAG
Primer_r ATGCTGTCCTTTGGCTCCGAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f CAGCCTCTCTCACCTCTTCAG
Primer_r ATGCTGTCCTTTGGCTCCGAG
PCR product length 144 bp
PCR conditions 95 °C15 sec68 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp