# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05691.fasta.huge -Q ../query/KIAA0792.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0792, 828 aa vs ./tmplib.23663 library 1986677 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.9912+/-0.00497; mu= 21.1900+/- 0.340 mean_var=86.1927+/-19.526, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.138146 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0489 ( 192 res) hg01128 ( 192) 780 165.2 6.2e-42 >>KIAA0489 ( 192 res) hg01128 (192 aa) initn: 780 init1: 780 opt: 780 Z-score: 844.7 bits: 165.2 E(): 6.2e-42 Smith-Waterman score: 780; 100.000% identity (100.000% similar) in 113 aa overlap (270-382:80-192) 240 250 260 270 280 290 KIAA07 KYKEENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK :::::::::::::::::::::::::::::: KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK 50 60 70 80 90 100 300 310 320 330 340 350 KIAA07 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE 110 120 130 140 150 160 360 370 380 390 400 410 KIAA07 ERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVT ::::::::::::::::::::::: KIAA04 ERHVQDQPLGMAFVTFQEKSMAT 170 180 190 828 residues in 1 query sequences 1986677 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:16:11 2008 done: Thu Dec 18 15:16:12 2008 Total Scan time: 0.590 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]