Gene/Protein Characteristic Table for KIAA0743
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Product ID ORK00123
Accession No AB018286
Description neurexin 3, transcript variant 1
Clone name hk04080
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4149 bp)
Predicted protein sequence (1205 aa)
Flexi ORF Clone FXC00123
Source Human adult brain
Rouge ID mKIAA0743 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4149 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Features of the protein sequence
Description

Length: 1205 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW81312 0 98.2 neurexin 3, iso...
Homo sapiens
XP_001165759 0 98.9 neurexin 3 isof...
Pan troglodytes
XP_001165965 0 98.7 similar to neur...
Pan troglodytes
XP_547934 0 98.6 similar to Neur...
Canis lupus fam...
XP_001165864 0 98.4 similar to neur...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB011150 0 76.4 KIAA0578
AB023138 0 61.4 KIAA0921
AB020675 1.4e-25 24.6 KIAA0868
AB051550 1.7e-23 24.3 KIAA1763
AB051501 2.3e-22 26.7 KIAA1714
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR012680 58 184 PF02210 Laminin G
IPR012680 246 390 PF02210 Laminin G
IPR006209 418 450 PF00008 EGF-like
IPR012680 484 614 PF02210 Laminin G
IPR012680 670 798 PF02210 Laminin G
IPR006209 824 856 PF00008 EGF-like
IPR012680 893 1012 PF02210 Laminin G
HMMSmart IPR001791 50 184 SM00282 Laminin G
IPR001791 238 390 SM00282 Laminin G
IPR006210 417 451 SM00181 EGF
IPR001791 476 614 SM00282 Laminin G
IPR001791 662 798 SM00282 Laminin G
IPR006210 823 857 SM00181 EGF
IPR001791 885 1012 SM00282 Laminin G
IPR003585 1151 1169 SM00294 Neurexin/syndecan/glycophorin C
ProfileScan IPR001791 29 211 PS50025 Laminin G
IPR001791 218 410 PS50025 Laminin G
IPR000742 414 451 PS50026 EGF-like
IPR001791 456 628 PS50025 Laminin G
IPR001791 642 817 PS50025 Laminin G
IPR000742 820 857 PS50026 EGF-like
IPR001791 861 1031 PS50025 Laminin G
ScanRegExp IPR000152 429 440 PS00010 Aspartic acid and asparagine hydroxylation site

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 1129 TTGMVVGIVAAAALCILILLYA 1150 PRIMARY 22
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ACAAGGACAGGGAGTATTACG
Primer_r CCCATTTCATAGTTCCAGCAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 14
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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