Gene/Protein Characteristic Table for KIAA0612
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Product ID ORK01985
Accession No AB014512
Description benzodiazepine receptor (peripheral) associated protein 1, transcript variant 2
Clone name hg00654s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (7479 bp)
Predicted protein sequence (1810 aa)
Flexi ORF Clone FXC01985
Source Human adult brain
Rouge ID mKIAA0612 by Kazusa Mouse cDNA Project
Note We replaced hg00654, former representative clones for KIAA0612 with hg00654s1. (2003/8/28)
Features of the cloned cDNA sequence
Description

Length: 7479 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1245 bp
Genome contig ID gi51511734r_53633595
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
AAAAGACATTTTATTATAATAAAGTCTATTTTCAC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAATCTATGCTGGACTCTCCATGGGCAAAGGACTCCTTGGAGGGGTGGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 r 53733595 53761120 31 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 1810 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAI50280 0 100.0 BZRAP1 protein ...
Homo sapiens
EAW94469 0 99.8 benzodiazapine ...
Homo sapiens
NP_077729 0 99.7 peripheral benz...
Homo sapiens
EAW94468 0 96.6 benzodiazapine ...
Homo sapiens
O95153 0 96.5 Peripheral-type...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051453 5.7e-10 30.0 KIAA1666
AB002316 1.3e-05 32.6 KIAA0318
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001452 609 669 PD000066 Src homology-3
IPR001452 1583 1642 PD000066 Src homology-3
IPR001452 1723 1780 PD000066 Src homology-3
FPrintScan IPR001452 1581 1591 PR00452 Src homology-3
IPR001452 1603 1618 PR00452 Src homology-3
IPR001452 1632 1644 PR00452 Src homology-3
HMMPfam IPR011511 620 671 PF07653 Variant SH3
IPR011511 1582 1644 PF07653 Variant SH3
IPR011511 1721 1781 PF07653 Variant SH3
HMMSmart IPR001452 609 672 SM00326 Src homology-3
IPR003961 744 821 SM00060 Fibronectin
IPR003961 835 908 SM00060 Fibronectin
IPR003961 932 1019 SM00060 Fibronectin
IPR001452 1581 1645 SM00326 Src homology-3
IPR001452 1720 1783 SM00326 Src homology-3
ProfileScan IPR001452 606 673 PS50002 Src homology-3
IPR003961 741 830 PS50853 Fibronectin
IPR003961 834 917 PS50853 Fibronectin
IPR003961 931 1029 PS50853 Fibronectin
IPR001452 1578 1646 PS50002 Src homology-3
IPR001452 1717 1784 PS50002 Src homology-3
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f TCAGTGCCTCAGTTCAGCTTC
Primer_r AATAAGGCAAACCCAACTCCG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name GeneBridge 4
Primer_f AAGGTCAAGGTGGGGGTTCAG
Primer_r TTCAGAGTGGGGTAGGGGTTC
PCR product length 133 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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