hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-08023347/chunk_1/iprscan-20080502-08023347.nocrc
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Query sequence: KIAA0612
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00326                                                 169.7    2.8e-46   3
SM00060                                                  51.7    9.7e-11   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/3     609   672 ..     1    58 []    53.3  3.2e-11
SM00060    1/3     744   821 ..     1    69 []    17.7      1.6
SM00060    2/3     835   908 ..     1    69 []    29.5  0.00045
SM00060    3/3     932  1019 ..     1    69 []     4.4       66
SM00326    2/3    1581  1645 ..     1    58 []    56.6  3.2e-12
SM00326    3/3    1720  1783 ..     1    58 []    59.9  3.4e-13

Alignments of top-scoring domains:
SM00326: domain 1 of 3, from 609 to 672: score 53.3, E = 3.2e-11
                   *->eyvvAlYDyea......qnedELsFkkGDiitvleks.ddgWweGel
                      +++ A Y+y++ +++++  e EL++++G+ i++    ++dg +eGel
    KIAA0612   609    QVFLARYSYNPfegpneNPEAELPLTAGEYIYIYGNMdEDGFFEGEL 655  

                   nrtGkeGlfPsnYVeeie<-*
                     +G++Gl+Psn+Ve++    
    KIAA0612   656 M-DGRRGLVPSNFVERVS    672  

SM00060: domain 1 of 3, from 744 to 821: score 17.7, E = 1.6
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP..ivgYr.......
                       + P++   l+v    ++      sv+l WepP+++v+ ++    ++
    KIAA0612   744    VPYPRR---LVVLKQLAH------SVVLAWEPPpeRVELHgfhicvn 781  

                   ..............ytltgLkPgaepwteYefrVrAvngndaGeg<-*
                   ++ ++  +++ +++++l++L   a      +++V+A ++  +G++   
    KIAA0612   782 gelrqalgpgappkAVLENLDLRA---GPLHISVQALTS--RGSS    821  

SM00060: domain 2 of 3, from 835 to 908: score 29.5, E = 0.00045
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr...
                         Ps    lrv+  t+t      s++++W p +++  + ++  +++
    KIAA0612   835    GVVPSQ---LRVHRLTAT------SAEITWVPGnsnlahAIYLNgee 872  

                   ..........ytltgLkPgaepwteYefrVrAvngndaGeg<-*
                    ++ ++++ ++t+ +L+Pg    t Y+ +V A     +G+    
    KIAA0612   873 cppaspstywATFCHLRPG----TPYQAQVEAQLP-PQGPW    908  

SM00060: domain 3 of 3, from 932 to 1019: score 4.4, E = 66
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv
                      P++P +   +++++  s ++     + +sW p   +  + +++  ++
    KIAA0612   932    PDAPLD---VQIEPGPS-PG----ILIISWLPVtidaagtsngvrVT 970  

                   gYr....................ytltgLkPgaepwteYefrVrAvngnd
                   gY    ++++  ++ +++ +++ + l+ L+  +      e+ Vr  +   
    KIAA0612   971 GYAiyadgqkimevasptagsvlVELSQLQLLQ---VCREVVVRTMSP-- 1015 

                   aGeg<-*
                   +Ge+   
    KIAA0612  1016 HGES    1019 

SM00326: domain 2 of 3, from 1581 to 1645: score 56.6, E = 3.2e-12
                   *->eyvvAlYDyea........qnedELsFkkGDiitvleks.ddgWweG
                      + +vAl+Dy++ + +++++ +e+EL+F++G+i+ v  + + dg ++G
    KIAA0612  1581    RIFVALFDYDPvsmspnpdAGEEELPFREGQILKVFGDKdADGFYQG 1627 

                   elnrtGkeGlfPsnYVeeie<-*
                   e +  G++G++P+n V+e+    
    KIAA0612  1628 EGG--GRTGYIPCNMVAEVA    1645 

SM00326: domain 3 of 3, from 1720 to 1783: score 59.9, E = 3.4e-13
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleks.ddgWweGe
                        +vA +Dy++++++++ + e EL+F++GD+itv    +ddg ++Ge
    KIAA0612  1720    HSMVAAFDYNPqesspnmDVEAELPFRAGDVITVFGGMdDDGFYYGE 1766 

                   lnrtGkeGlfPsnYVeeie<-*
                   ln  G++Gl+Psn++e      
    KIAA0612  1767 LN--GQRGLVPSNFLEGPG    1783 

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