hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-08023347/chunk_1/iprscan-20080502-08023347.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0612 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07653.7.ls Variant SH3 domain 183.4 5.3e-52 3 PF07653.7.fs Variant SH3 domain 180.7 2e-51 3 PF00018.18.ls SH3 domain 91.6 2.3e-24 3 PF00018.18.fs SH3 domain 86.5 6.9e-23 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/3 609 671 .. 1 59 [] 23.1 7.1e-05 PF07653.7.ls 1/3 610 671 .. 1 69 [] 37.1 5.5e-08 PF07653.7.fs 1/3 620 671 .. 8 69 .] 38.2 2.4e-10 PF00018.18.fs 1/3 630 671 .. 16 59 .] 21.9 3.3e-05 PF00018.18.fs 2/3 1581 1644 .. 1 59 [] 34.9 9.5e-09 PF00018.18.ls 2/3 1581 1644 .. 1 59 [] 36.8 7e-08 PF07653.7.ls 2/3 1582 1644 .. 1 69 [] 73.9 4.7e-19 PF07653.7.fs 2/3 1582 1644 .. 1 69 [] 72.0 4.2e-20 PF00018.18.fs 3/3 1720 1782 .. 1 59 [] 29.7 2.4e-07 PF00018.18.ls 3/3 1720 1782 .. 1 59 [] 31.7 2.4e-06 PF07653.7.fs 3/3 1721 1781 .. 1 69 [] 70.5 1.1e-19 PF07653.7.ls 3/3 1721 1781 .. 1 69 [] 72.3 1.4e-18 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 3, from 609 to 671: score 23.1, E = 7.1e-05 *->kkvvALYDYeare......sdELsFkkGDvitvleksddpgWWkgrl +++ A Y Y++ e+++++++ EL+++ G+ i++ d++g +g+l KIAA0612 609 QVFLARYSYNPFEgpnenpEAELPLTAGEYIYIYGNMDEDGFFEGEL 655 kgtgGkeGliPsNYVepv<-* + G++Gl+PsN+Ve v KIAA0612 656 MD--GRRGLVPSNFVERV 671 PF07653.7.ls: domain 1 of 3, from 610 to 671: score 37.1, E = 5.5e-08 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww ++ a +y++ +++n + e+eL l++G+ ++++ g++d dg+ KIAA0612 610 VFLARYSYNP--FEGPNEnPEAELPLTAGEYIYIY---GNMDEDGFF 651 egeslggGrrrRGlvPssaveel<-* ege+ +Grr GlvPs++ve + KIAA0612 652 EGEL-MDGRR--GLVPSNFVERV 671 PF07653.7.fs: domain 1 of 3, from 620 to 671: score 38.2, E = 2.4e-10 *->yvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwegeslggG +++ +++n+ e+eL l++G+ ++++ g++d dg+ ege+ +G KIAA0612 620 FEG-PNENP---EAELPLTAGEYIYIY---GNMDEDGFFEGEL-MDG 658 rrrRGlvPssaveel<-* rr GlvPs++ve + KIAA0612 659 RR--GLVPSNFVERV 671 PF00018.18.fs: domain 1 of 3, from 630 to 671: score 21.9, E = 3.3e-05 *->ELsFkkGDvitvleksddpgWWkgrlkgtgGkeGliPsNYVepv<-* EL+++ G+ i++ d++g +g+l + G++Gl+PsN+Ve v KIAA0612 630 ELPLTAGEYIYIYGNMDEDGFFEGELMD--GRRGLVPSNFVERV 671 PF00018.18.fs: domain 2 of 3, from 1581 to 1644: score 34.9, E = 9.5e-09 *->kkvvALYDYeare........sdELsFkkGDvitvleksddpgWWkg +++vAL+DY++++ +++++ +++EL+F++G +++v ++d++g + g KIAA0612 1581 RIFVALFDYDPVSmspnpdagEEELPFREGQILKVFGDKDADGFYQG 1627 rlkgtgGkeGliPsNYVepv<-* + G++G+iP+N V++v KIAA0612 1628 EGG---GRTGYIPCNMVAEV 1644 PF00018.18.ls: domain 2 of 3, from 1581 to 1644: score 36.8, E = 7e-08 *->kkvvALYDYeare........sdELsFkkGDvitvleksddpgWWkg +++vAL+DY++++ +++++ +++EL+F++G +++v ++d++g + g KIAA0612 1581 RIFVALFDYDPVSmspnpdagEEELPFREGQILKVFGDKDADGFYQG 1627 rlkgtgGkeGliPsNYVepv<-* + G++G+iP+N V++v KIAA0612 1628 EGG---GRTGYIPCNMVAEV 1644 PF07653.7.ls: domain 2 of 3, from 1582 to 1644: score 73.9, E = 4.7e-19 *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkVidvggskdddgw ++a++dy++ ++++n++ +eeeL +++G+++kV+ g+kd+dg+ KIAA0612 1582 IFVALFDYDP-VSMSPNPdaGEEELPFREGQILKVF---GDKDADGF 1624 wegeslggGrrrRGlvPssaveel<-* ++ge gGr+ G++P ++v+e+ KIAA0612 1625 YQGEG--GGRT--GYIPCNMVAEV 1644 PF07653.7.fs: domain 2 of 3, from 1582 to 1644: score 72.0, E = 4.2e-20 *->ygraiedyvaAtdknenl..eeeeLslkkGdvvkVidvggskdddgw ++a++dy++ ++++n++ +eeeL +++G+++kV+ g+kd+dg+ KIAA0612 1582 IFVALFDYDP-VSMSPNPdaGEEELPFREGQILKVF---GDKDADGF 1624 wegeslggGrrrRGlvPssaveel<-* ++ge gGr+ G++P ++v+e+ KIAA0612 1625 YQGEG--GGRT--GYIPCNMVAEV 1644 PF00018.18.fs: domain 3 of 3, from 1720 to 1782: score 29.7, E = 2.4e-07 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr vA +DY+++e++++ + + EL+F+ GDvitv dd+g ++g+ KIAA0612 1720 HSMVAAFDYNPQEsspnmdvEAELPFRAGDVITVFGGMDDDGFYYGE 1766 lkgtgGkeGliPsNYVepv<-* l+ G++Gl+PsN++e KIAA0612 1767 LN---GQRGLVPSNFLEGP 1782 PF00018.18.ls: domain 3 of 3, from 1720 to 1782: score 31.7, E = 2.4e-06 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr vA +DY+++e++++ + + EL+F+ GDvitv dd+g ++g+ KIAA0612 1720 HSMVAAFDYNPQEsspnmdvEAELPFRAGDVITVFGGMDDDGFYYGE 1766 lkgtgGkeGliPsNYVepv<-* l+ G++Gl+PsN++e KIAA0612 1767 LN---GQRGLVPSNFLEGP 1782 PF07653.7.fs: domain 3 of 3, from 1721 to 1781: score 70.5, E = 1.1e-19 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww ++a +dy++ + ++n+++e+eL +++Gdv+ V+ g++dddg++ KIAA0612 1721 SMVAAFDYNP-QESSPNMdVEAELPFRAGDVITVF---GGMDDDGFY 1763 egeslggGrrrRGlvPssaveel<-* +ge+ +G+r GlvPs+++ e KIAA0612 1764 YGEL--NGQR--GLVPSNFL-EG 1781 PF07653.7.ls: domain 3 of 3, from 1721 to 1781: score 72.3, E = 1.4e-18 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww ++a +dy++ + ++n+++e+eL +++Gdv+ V+ g++dddg++ KIAA0612 1721 SMVAAFDYNP-QESSPNMdVEAELPFRAGDVITVF---GGMDDDGFY 1763 egeslggGrrrRGlvPssaveel<-* +ge+ +G+r GlvPs+++ e KIAA0612 1764 YGEL--NGQR--GLVPSNFL-EG 1781 //