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Gene/Protein Characteristic Table for KIAA0439

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Product ID	ORK00077
Accession No	AB007899
Description	neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, transcript variant c
Clone name	hj00462
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4879 bp) Predicted protein sequence (995 aa)
HaloTag ORF Clone	FHC00077
Flexi ORF Clone	FXC00077
Source	Human adult brain
Rouge ID	mKIAA0439 by Kazusa Mouse cDNA Project

Length: 4879 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 995 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000008	77	89	PR00360	C2 calcium-dependent membrane targeting
	IPR000008	108	121	PR00360	C2 calcium-dependent membrane targeting
HMMPfam	IPR000008	79	149	PF00168	C2 calcium-dependent membrane targeting
	IPR001202	235	264	PF00397	WW/Rsp5/WWP
	IPR001202	407	436	PF00397	WW/Rsp5/WWP
	IPR001202	519	548	PF00397	WW/Rsp5/WWP
	IPR001202	570	599	PF00397	WW/Rsp5/WWP
	IPR000569	689	994	PF00632	HECT
HMMSmart	IPR000008	53	164	SM00239	C2 calcium-dependent membrane targeting
	IPR001202	234	266	SM00456	WW/Rsp5/WWP
	IPR001202	406	438	SM00456	WW/Rsp5/WWP
	IPR001202	518	550	SM00456	WW/Rsp5/WWP
	IPR001202	569	601	SM00456	WW/Rsp5/WWP
	IPR000569	658	994	SM00119	HECT
ProfileScan	IPR000008	69	149	PS50004	C2 calcium-dependent membrane targeting
	IPR001202	233	266	PS50020	WW/Rsp5/WWP
	IPR001202	405	438	PS50020	WW/Rsp5/WWP
	IPR001202	517	550	PS50020	WW/Rsp5/WWP
	IPR001202	568	601	PS50020	WW/Rsp5/WWP
	IPR000569	660	994	PS50237	HECT
ScanRegExp	IPR001202	239	264	PS01159	WW/Rsp5/WWP
	IPR001202	411	436	PS01159	WW/Rsp5/WWP
	IPR001202	523	548	PS01159	WW/Rsp5/WWP
	IPR001202	574	599	PS01159	WW/Rsp5/WWP

RT-PCR

Experimental conditions

Chromosome No. 18
Experimental conditions

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