hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03022239/chunk_1/iprscan-20080502-03022239.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0439 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00119 624.3 4.1e-183 1 SM00456 250.7 1.2e-70 4 SM00239 76.3 3.6e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 53 164 .. 1 92 [] 76.3 3.6e-18 SM00456 1/4 234 266 .. 1 34 [] 61.7 9.2e-14 SM00456 2/4 406 438 .. 1 34 [] 66.5 3.3e-15 SM00456 3/4 518 550 .. 1 34 [] 62.2 6.4e-14 SM00456 4/4 569 601 .. 1 34 [] 60.3 2.6e-13 SM00119 1/1 658 994 .. 1 407 [] 624.3 4.1e-183 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 53 to 164: score 76.3, E = 3.6e-18 *->tLtvkiisArnLp................DPYVkvs........... +L + + +Lp ++ ++++ ++ DPYVk+s + ++ KIAA0439 53 LLGETDHLHLDLPlsplptsdelflpgicDPYVKLSlyvadenrela 99 ..kTkvvkktlsgfNPvWnEesetFeFevpp..s.LeieVyDk......d +Tk++kktl NP+WnE +F+F v+p++++L +eV+D+++ +++d KIAA0439 100 lvQTKTIKKTL---NPKWNE---EFYFRVNPsnHrLLFEVFDEnrltrdD 143 fiGrvtippnnahqhsadglihlsell.ggrh.kl<-* f+G+v +p ls l++++++ + KIAA0439 144 FLGQVDVP--------------LSHLPtEDPTmER 164 SM00456: domain 1 of 4, from 234 to 266: score 61.7, E = 9.2e-14 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPpgWee d+ Gr+YY+Nh++++tqW +P + KIAA0439 234 PLPPGWEEKVDNL-GRTYYVNHNNRTTQWHRPSL 266 SM00456: domain 2 of 4, from 406 to 438: score 66.5, E = 3.3e-15 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* +lP+gWeerkd++ Gr+YY+Nh++++t+W++P + KIAA0439 406 GLPSGWEERKDAK-GRTYYVNHNNRTTTWTRPIM 438 SM00456: domain 3 of 4, from 518 to 550: score 62.2, E = 6.4e-14 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* lPpgWe+r+ p+ Grp++++h+Tk+t+We+Pr+ KIAA0439 518 FLPPGWEMRIAPN-GRPFFIDHNTKTTTWEDPRL 550 SM00456: domain 4 of 4, from 569 to 601: score 60.3, E = 2.6e-13 *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-* plPpgWeer++ d Gr++Y++h++k tqWe+Pr+ KIAA0439 569 PLPPGWEERIHLD-GRTFYIDHNSKITQWEDPRL 601 SM00119: domain 1 of 1, from 658 to 994: score 624.3, E = 4.1e-183 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske + pd Lk+r L Ief + E glD+GGv rE+ffllske KIAA0439 658 VKRPDVLKAR----LWIEF------ESEKGLDYGGVAREWFFLLSKE 694 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav +fnp +ygLF+ys+ dn y+L++nP +g++ne+hl+ KIAA0439 695 MFNP-YYGLFEYSATDN-------------YTLQINPNSGLCNEDHLS-- 728 yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP yF fiGrv G+A+++++llD +F rpFyK++Lgk+ +tl D+es+D+ KIAA0439 729 YFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQ----ITLNDMESVDS 774 elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles e+y+sL+w+ lend+te ld L F i++e+ KIAA0439 775 EYYNSLKWI-------------------LENDPTE--LD--LMFCIDEEN 801 dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG fg+ +v+Lkp+Gs+i+VT+eNk EY++lvi++r++++v+kq++AF+eG KIAA0439 802 -FGQTYQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEG 850 FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq F e++p +l++ +Fde+ELeLL+cGl+ ++dv+d++ + +y++gY n++ KIAA0439 851 FTELLPIDLIK-IFDENELELLMCGLG-DVDVNDWRQHSIYKNGYCPNHP 898 tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq +i +wFW +v +++e+r++LLqFVTG+sr+P ++GFa+L++sNGpq KIAA0439 899 VI---QWFWKAVLLMDAEKRIRLLQFVTGTSRVP--MNGFAELYGSNGPQ 943 kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg FtI+++g + + LP+AhTCfNrL+LPpY++ e LreKLL+A+++ KIAA0439 944 LFTIEQWG-----SPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAVEN- 987 RiggeGFgls<-* ++GF+ + KIAA0439 988 ---AQGFEGV 994 //