hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03022239/chunk_1/iprscan-20080502-03022239.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0439 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 635.2 5e-188 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 633.3 1.9e-187 1 PF00397.16.ls WW domain 246.8 4.2e-71 4 PF00397.16.fs WW domain 238.8 1.1e-68 4 PF00168.20.fs C2 domain 83.8 2.3e-24 1 PF00168.20.ls C2 domain 72.2 1.6e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00168.20.ls 1/1 54 149 .. 1 88 [] 72.2 1.6e-18 PF00168.20.fs 1/1 79 149 .. 19 88 .] 83.8 2.3e-24 PF00397.16.fs 1/4 235 264 .. 1 30 [] 58.9 1.6e-15 PF00397.16.ls 1/4 235 264 .. 1 30 [] 60.9 3.7e-15 PF00397.16.ls 2/4 407 436 .. 1 30 [] 65.1 2e-16 PF00397.16.fs 2/4 407 436 .. 1 30 [] 63.1 1e-16 PF00397.16.fs 3/4 519 548 .. 1 30 [] 62.4 1.7e-16 PF00397.16.ls 3/4 519 548 .. 1 30 [] 64.4 3.5e-16 PF00397.16.fs 4/4 570 599 .. 1 30 [] 54.3 3e-14 PF00397.16.ls 4/4 570 599 .. 1 30 [] 56.4 9e-14 PF00632.15.fs 1/1 689 994 .. 1 351 [] 633.3 1.9e-187 PF00632.15.ls 1/1 689 994 .. 1 351 [] 635.2 5e-188 Alignments of top-scoring domains: PF00168.20.ls: domain 1 of 1, from 54 to 149: score 72.2, E = 1.6e-18 *->LrVtvieAknLppkDk.......kngksDPYVkvylggdkkdqk... L t + +Lp +++++ + g +DPYVk++l + +++ KIAA0439 54 LGETDHLHLDLPLSPLptsdelfLPGICDPYVKLSLYVADE-NRela 99 .kkTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGe +Tk+ikktlNP+WNE+F+F + p+ ++ L +eV+D++r++rddflG+ KIAA0439 100 lVQTKTIKKTLNPKWNEEFYFR-VNPSNHR-LLFEVFDENRLTRDDFLGQ 147 vs<-* v KIAA0439 148 VD 149 PF00168.20.fs: domain 1 of 1, from 79 to 149: score 83.8, E = 2.3e-24 *->gksDPYVkvylggdkkdqk....kkTkvikktlNPvWNEtFtFevpp g +DPYVk++l + +++ +Tk+ikktlNP+WNE+F+F + KIAA0439 79 GICDPYVKLSLYVADE-NRelalVQTKTIKKTLNPKWNEEFYFR-VN 123 pdlqetLeieVyDydrfgrddflGevs<-* p+ ++ L +eV+D++r++rddflG+v KIAA0439 124 PSNHR-LLFEVFDENRLTRDDFLGQVD 149 PF00397.16.fs: domain 1 of 4, from 235 to 264: score 58.9, E = 1.6e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWee d Gr+YY+Nhn++tTqW +P KIAA0439 235 LPPGWEEKVDNLGRTYYVNHNNRTTQWHRP 264 PF00397.16.ls: domain 1 of 4, from 235 to 264: score 60.9, E = 3.7e-15 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWee d Gr+YY+Nhn++tTqW +P KIAA0439 235 LPPGWEEKVDNLGRTYYVNHNNRTTQWHRP 264 PF00397.16.ls: domain 2 of 4, from 407 to 436: score 65.1, E = 2e-16 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp+gWeer+d++Gr+YY+Nhn++tT+W++P KIAA0439 407 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 436 PF00397.16.fs: domain 2 of 4, from 407 to 436: score 63.1, E = 1e-16 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lp+gWeer+d++Gr+YY+Nhn++tT+W++P KIAA0439 407 LPSGWEERKDAKGRTYYVNHNNRTTTWTRP 436 PF00397.16.fs: domain 3 of 4, from 519 to 548: score 62.4, E = 1.7e-16 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r+ p+Grp++++hnTktT+We+P KIAA0439 519 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDP 548 PF00397.16.ls: domain 3 of 4, from 519 to 548: score 64.4, E = 3.5e-16 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWe+r+ p+Grp++++hnTktT+We+P KIAA0439 519 LPPGWEMRIAPNGRPFFIDHNTKTTTWEDP 548 PF00397.16.fs: domain 4 of 4, from 570 to 599: score 54.3, E = 3e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWeer++ dGr++Y++hn+k TqWe+P KIAA0439 570 LPPGWEERIHLDGRTFYIDHNSKITQWEDP 599 PF00397.16.ls: domain 4 of 4, from 570 to 599: score 56.4, E = 9e-14 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgWeer++ dGr++Y++hn+k TqWe+P KIAA0439 570 LPPGWEERIHLDGRTFYIDHNSKITQWEDP 599 PF00632.15.fs: domain 1 of 1, from 689 to 994: score 633.3, E = 1.9e-187 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Lls+e+fnP+ygLFeys a+d+ytlqinP+s+ +n++ KIAA0439 689 FLLSKEMFNPYYGLFEYS----------ATDNYTLQINPNSGLCNED 725 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yF+FiGr+ GlA+++g+lld +F r+FYK++L gk +tl D+esvD KIAA0439 726 HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMML--GKQITLNDMESVD 773 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas +e+ynSLkw+lend++ +L+L F+++ee+ f KIAA0439 774 SEYYNSLKWILENDPT-------------ELDLMFCIDEEN---F----- 802 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+t +v+ LkPnG++I+VTneNk+eY++L++++r+ ++++kQ++AF++ KIAA0439 803 --GQTYQVD-LKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLE 849 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF e++p++l+++Fd++ELelL+cG+++ +Dv+d++ + +Yk+gY +++p KIAA0439 850 GFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHP 898 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +IqwFW++v ++ e+r +LLqFvTG+sRvP++GF++L+ GsnGp++ KIAA0439 899 --VIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELY--GSNGPQL 944 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG FtIe + g+++ LP+AHTCFNrLdLPpY++ E+LrekLl+A+ e+ +G KIAA0439 945 FTIEQW---GSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQG 990 Fgle<-* F+ + KIAA0439 991 FEGV 994 PF00632.15.ls: domain 1 of 1, from 689 to 994: score 635.2, E = 5e-188 *->tLlsrelfnPdygLFeysddtdvnesgyaedsytlqinPlssesnpe +Lls+e+fnP+ygLFeys a+d+ytlqinP+s+ +n++ KIAA0439 689 FLLSKEMFNPYYGLFEYS----------ATDNYTLQINPNSGLCNED 725 hlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDlesvD hl+yF+FiGr+ GlA+++g+lld +F r+FYK++L gk +tl D+esvD KIAA0439 726 HLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMML--GKQITLNDMESVD 773 PelynSLkwllendgdrhILLgsledveedLeLtFsveeessagfdpdas +e+ynSLkw+lend++ +L+L F+++ee+ f KIAA0439 774 SEYYNSLKWILENDPT-------------ELDLMFCIDEEN---F----- 802 dfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQfeAFrk G+t +v+ LkPnG++I+VTneNk+eY++L++++r+ ++++kQ++AF++ KIAA0439 803 --GQTYQVD-LKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLE 849 GFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkggYtedsp GF e++p++l+++Fd++ELelL+cG+++ +Dv+d++ + +Yk+gY +++p KIAA0439 850 GFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHP 898 lktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpGsnGppk +IqwFW++v ++ e+r +LLqFvTG+sRvP++GF++L+ GsnGp++ KIAA0439 899 --VIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELY--GSNGPQL 944 FtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAIneeteG FtIe + g+++ LP+AHTCFNrLdLPpY++ E+LrekLl+A+ e+ +G KIAA0439 945 FTIEQW---GSPEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV-ENAQG 990 Fgle<-* F+ + KIAA0439 991 FEGV 994 //