Gene/Protein Characteristic Table for KIAA0287
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Product ID ORK00496
Accession No AB006625
Description paternally expressed 3, transcript variant 5
Clone name fg06332
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5994 bp)
Predicted protein sequence (1523 aa)
Flexi ORF Clone FXC00496
Source Human fetal brain
Rouge ID mKIAA0287 by Kazusa Mouse cDNA Project
Note We replaced ha06162, former representative clones for KIAA0287 with fg06332. (2001/5/29)
Features of the cloned cDNA sequence
Description

Length: 5994 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1244 bp
Genome contig ID gi42406306r_61915612
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TATCTGACCCTCTAACTCCATGTCTAACTTGCATT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAATTCTTTACAGTCAACCCAAGCTTAACATGGACTCAGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 19 r 62015612 62043879 9 99.1 Perfect prediction
Features of the protein sequence
Description

Length: 1523 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW72477 0 99.9 hCG1685807, iso...
Homo sapiens
Q9GZU2 0 99.8 Paternally-expr...
Homo sapiens
A1YFC1 0 98.9 Paternally-expr...
Gorilla gorilla...
A2T7F2 0 98.9 Paternally-expr...
Pan troglodytes
A1YGK6 0 98.8 Paternally-expr...
Pan paniscus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB002324 3e-16 26.7 KIAA0326
AB075836 3.7e-14 30.4 KIAA1956
AB037770 7.8e-14 27.2 KIAA1349
AB058755 1.7e-12 25.8 KIAA1852
AB058730 4e-12 27.2 KIAA1827
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR007087 498 520 PD000003 Zinc finger
IPR007087 562 585 PD000003 Zinc finger
IPR007087 904 926 PD000003 Zinc finger
IPR007087 1267 1287 PD000003 Zinc finger
HMMPfam IPR003309 2 71 PF02023 Transcriptional regulator SCAN
IPR007087 387 409 PF00096 Zinc finger
IPR007087 440 462 PF00096 Zinc finger
IPR007087 498 520 PF00096 Zinc finger
IPR007087 562 584 PF00096 Zinc finger
IPR007087 904 926 PF00096 Zinc finger
IPR007087 1042 1064 PF00096 Zinc finger
IPR007087 1098 1120 PF00096 Zinc finger
IPR007087 1160 1182 PF00096 Zinc finger
IPR007087 1217 1239 PF00096 Zinc finger
IPR007087 1267 1289 PF00096 Zinc finger
IPR007087 1440 1462 PF00096 Zinc finger
IPR007087 1499 1521 PF00096 Zinc finger
HMMSmart IPR003309 3 81 SM00431 Transcriptional regulator SCAN
IPR015880 387 409 SM00355 Zinc finger
IPR015880 440 462 SM00355 Zinc finger
IPR015880 498 520 SM00355 Zinc finger
IPR015880 562 584 SM00355 Zinc finger
IPR015880 904 926 SM00355 Zinc finger
IPR015880 1042 1064 SM00355 Zinc finger
IPR015880 1098 1120 SM00355 Zinc finger
IPR015880 1160 1182 SM00355 Zinc finger
IPR015880 1217 1239 SM00355 Zinc finger
IPR015880 1267 1289 SM00355 Zinc finger
IPR015880 1440 1462 SM00355 Zinc finger
IPR015880 1499 1521 SM00355 Zinc finger
ProfileScan IPR003309 7 58 PS50804 Transcriptional regulator SCAN
IPR007087 387 414 PS50157 Zinc finger
IPR007087 440 463 PS50157 Zinc finger
IPR007087 498 525 PS50157 Zinc finger
IPR007087 562 589 PS50157 Zinc finger
IPR007087 904 931 PS50157 Zinc finger
IPR007087 1042 1065 PS50157 Zinc finger
IPR007087 1098 1125 PS50157 Zinc finger
IPR007087 1160 1187 PS50157 Zinc finger
IPR007087 1217 1244 PS50157 Zinc finger
IPR007087 1267 1294 PS50157 Zinc finger
IPR007087 1440 1463 PS50157 Zinc finger
IPR007087 1499 1523 PS50157 Zinc finger
ScanRegExp IPR007087 389 409 PS00028 Zinc finger
IPR007087 442 462 PS00028 Zinc finger
IPR007087 500 520 PS00028 Zinc finger
IPR007087 564 584 PS00028 Zinc finger
IPR007087 906 926 PS00028 Zinc finger
IPR007087 1044 1064 PS00028 Zinc finger
IPR007087 1100 1120 PS00028 Zinc finger
IPR007087 1162 1182 PS00028 Zinc finger
IPR007087 1219 1239 PS00028 Zinc finger
IPR007087 1269 1289 PS00028 Zinc finger
IPR007087 1442 1462 PS00028 Zinc finger
IPR007087 1501 1521 PS00028 Zinc finger
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 19
Experimental conditions
Panel name Genebridge 4
Primer_f GTGCATAATACATACCCAGAG
Primer_r GTTAGCAGTAGTTGTTAGGTG
PCR product length 94 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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