hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22345664/chunk_1/iprscan-20080501-22345664.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0287 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 314.5 7.5e-90 12 SM00431 21.9 1.7e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00431 1/1 3 81 .. 1 113 [] 21.9 1.7e-08 SM00355 1/12 387 409 .. 1 23 [] 25.9 0.0055 SM00355 2/12 440 462 .. 1 23 [] 26.8 0.0031 SM00355 3/12 498 520 .. 1 23 [] 25.9 0.0057 SM00355 4/12 562 584 .. 1 23 [] 28.9 0.00069 SM00355 5/12 904 926 .. 1 23 [] 27.5 0.0019 SM00355 6/12 1042 1064 .. 1 23 [] 24.9 0.011 SM00355 7/12 1098 1120 .. 1 23 [] 27.2 0.0023 SM00355 8/12 1160 1182 .. 1 23 [] 25.3 0.0085 SM00355 9/12 1217 1239 .. 1 23 [] 24.9 0.011 SM00355 10/12 1267 1289 .. 1 23 [] 23.5 0.03 SM00355 11/12 1440 1462 .. 1 23 [] 25.7 0.0066 SM00355 12/12 1499 1521 .. 1 23 [] 28.0 0.0013 Alignments of top-scoring domains: SM00431: domain 1 of 1, from 3 to 81: score 21.9, E = 1.7e-08 *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL t G W +PE++TKE I EL KIAA0287 3 ---------------TLG-------------GWVQPETRTKEEIIEL 21 LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah LVLEQ LTI P+ L WVr Pe+ E VtLlE+ e p KIAA0287 22 LVLEQYLTIIPEKLKPWVRAKKPENCEKLVTLLENYK-EMYQPE-----D 65 vhgqevLleemvplga<-* ++ +v +++ ++ KIAA0287 66 DNNSDVTSDDDMTRNR 81 SM00355: domain 1 of 12, from 387 to 409: score 25.9, E = 0.0055 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+sfs +++++H+ +H KIAA0287 387 YVCDE-CGRSFSVIsEFVEHQIMH 409 SM00355: domain 2 of 12, from 440 to 462: score 26.8, E = 0.0031 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ Cg++f+ aL +H ++H KIAA0287 440 FECKD-CGETFNKSaALAEHRKIH 462 SM00355: domain 3 of 12, from 498 to 520: score 25.9, E = 0.0057 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + C+++f + +aL++H+++H KIAA0287 498 YECRV-CKETFLHSsALIEHQKIH 520 SM00355: domain 4 of 12, from 562 to 584: score 28.9, E = 0.00069 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg++f + ++Lk+H+++H KIAA0287 562 YECKV-CGETFLHSsSLKEHQKIH 584 SM00355: domain 5 of 12, from 904 to 926: score 27.5, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg++f + ++L++H+++H KIAA0287 904 YECQE-CGECFAHSsDLTEHQKIH 926 SM00355: domain 6 of 12, from 1042 to 1064: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cg f + ++L+ H++vH KIAA0287 1042 YECED-CGLGFVDLtDLTDHQKVH 1064 SM00355: domain 7 of 12, from 1098 to 1120: score 27.2, E = 0.0023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+Cp+ Cg+sf + + L +H+r+H KIAA0287 1098 YECPK-CGESFIHSsFLFEHQRIH 1120 SM00355: domain 8 of 12, from 1160 to 1182: score 25.3, E = 0.0085 *->ykCpigCgksfssk.aLkrHmrvH<-* +C + Cg+ f + +aL++Hmr H KIAA0287 1160 IRCLL-CGQGFIHSsALNEHMRLH 1182 SM00355: domain 9 of 12, from 1217 to 1239: score 24.9, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cg+sf ++ +L H+ vH KIAA0287 1217 FECAV-CGESFVNPaELADHVTVH 1239 SM00355: domain 10 of 12, from 1267 to 1289: score 23.5, E = 0.03 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgksf + + L++H H KIAA0287 1267 YECKD-CGKSFIHStVLTKHKELH 1289 SM00355: domain 11 of 12, from 1440 to 1462: score 25.7, E = 0.0066 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ C ++f+s +a+ +H+++H KIAA0287 1440 YDCHE-CTETFTSStAFSEHLKTH 1462 SM00355: domain 12 of 12, from 1499 to 1521: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg+ f+++ +L rH+ +H KIAA0287 1499 FKCDV-CGQLFNDRlSLARHQNTH 1521 //