Gene/Protein Characteristic Table for KIAA0213
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Product ID ORK05920
Accession No D86968
Description mitogen-activated protein kinase kinase kinase 4, transcript variant 2
Clone name ha04841s1
Vector information
The cDNA fragment was originally inserted at Apa I-NotI site ...
cDNA sequence DNA sequence (5396 bp)
Predicted protein sequence (1626 aa)
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0213 by Kazusa Mouse cDNA Project
Note We replaced ha04841, former representative clones for KIAA0213 with ha04841s1. (2002/12/27)
Features of the cloned cDNA sequence
Description

Length: 5396 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 514 bp
Genome contig ID gi89161210f_161232749
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
CTTTTTTCAATAAATGGTTTATTTTAGGAAAGCTC
Flanking genome sequence
(225659 - 225708)
----+----*----+----*----+----*----+----*----+----*
AGTTATATTGTCTTTTAATGGTTAACACTTATGAGCCAACGCAGTATGAT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 6 f 161332749 161458406 26 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 1626 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW47586 0 100.0 mitogen-activat...
Homo sapiens
AAI46771 0 99.9 Mitogen-activat...
Homo sapiens
CAH70639 0 99.9 mitogen-activat...
Homo sapiens
XP_862916 0 93.7 similar to mito...
Canis lupus fam...
AAC53127 0 89.2 MEK kinase 4b [...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D86959 9.8e-10 35.6 KIAA0204
AB032968 8.2e-08 29.8 KIAA1142
AB067488 8.2e-08 30.0 KIAA1901
AB037782 8.9e-08 33.2 KIAA1361
AB033090 1.2e-07 33.7 KIAA1264
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR000719 1367 1607 PD000001 Protein kinase
HMMPfam IPR000719 1361 1619 PF00069 Protein kinase
HMMSmart IPR001245 1361 1619 SM00219 Tyrosine protein kinase
IPR002290 1361 1619 SM00220 Serine/threonine protein kinase
ProfileScan IPR000719 1361 1619 PS50011 Protein kinase
ScanRegExp IPR000719 1367 1390 PS00107 Protein kinase
IPR008271 1477 1489 PS00108 Serine/threonine protein kinase
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name Genebridge 4
Primer_f ACTACTGTACACGGACCATCG
Primer_r TAAAAACAAGGTATGGGACGC
PCR product length 137 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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