Gene/Protein Characteristic Table for KIAA0036
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Product ID ORK00379
Accession No D25278
Description IQ motif containing B1, transcript variant 1
Clone name ha02085
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (2535 bp)
Predicted protein sequence (632 aa)
Flexi ORF Clone FXC00379
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0036 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 2535 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 582 bp
Genome contig ID gi89161205r_122871300
PolyA signal sequence
(ATTAAA,-21)
+----*----+----*----+----*----+----
AATGCATTCTTTCTATTAAACTGTGAGAACTACAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AATGTACTGTTTCCCTTTTTGTCTTTTCTCCTAGGAATCTCAAAGCTAAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 122971300 123036563 15 99.4 Perfect prediction
Features of the protein sequence
Description

Length: 632 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001150926 0 98.6 nephrocystin 5 ...
Pan troglodytes
Q15051 0 100.0 IQ calmodulin-b...
Homo sapiens
AAW47233 0 99.8 nephrocystin 5 ...
Homo sapiens
XP_001502301 2.1e-203 89.8 IQ motif contai...
Equus caballus
XP_535758 1.6e-200 88.6 similar to IQ c...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB032945 0.00051 23.8 KIAA1119
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000048 329 349 PF00612 IQ calmodulin-binding region
IPR000048 422 442 PF00612 IQ calmodulin-binding region
HMMSmart IPR000048 327 349 SM00015 IQ calmodulin-binding region
IPR000048 420 442 SM00015 IQ calmodulin-binding region
ProfileScan IPR000048 328 357 PS50096 IQ calmodulin-binding region
IPR000048 421 450 PS50096 IQ calmodulin-binding region
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 6
Experimental conditions
Panel name Genebridge 4
Primer_f CCTAGCGAAGTGCCGTAAGA
Primer_r GCTCCCTACTGACCACATCT
PCR product length 155 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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