hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15350749/chunk_1/iprscan-20080501-15350749.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0036 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00612.17.ls IQ calmodulin-binding motif 73.3 6.9e-19 4 PF00612.17.fs IQ calmodulin-binding motif 65.4 1.8e-18 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00612.17.fs 1/4 329 349 .. 1 21 [] 26.5 7.9e-07 PF00612.17.ls 1/4 329 349 .. 1 21 [] 28.5 2.2e-05 PF00612.17.fs 3/4 422 442 .. 1 21 [] 31.9 2e-08 PF00612.17.ls 3/4 422 442 .. 1 21 [] 33.8 5.4e-07 Alignments of top-scoring domains: PF00612.17.fs: domain 1 of 4, from 329 to 349: score 26.5, E = 7.9e-07 *->rraaikIQaawRGylaRkryk<-* ++aa +IQa+w+G+++Rkr+k KIAA0036 329 HQAACLIQAYWKGFQTRKRLK 349 PF00612.17.ls: domain 1 of 4, from 329 to 349: score 28.5, E = 2.2e-05 *->rraaikIQaawRGylaRkryk<-* ++aa +IQa+w+G+++Rkr+k KIAA0036 329 HQAACLIQAYWKGFQTRKRLK 349 PF00612.17.fs: domain 3 of 4, from 422 to 442: score 31.9, E = 2e-08 *->rraaikIQaawRGylaRkryk<-* +++a++IQ++wRGy+ Rk+++ KIAA0036 422 EKSALIIQKHWRGYRERKNFH 442 PF00612.17.ls: domain 3 of 4, from 422 to 442: score 33.8, E = 5.4e-07 *->rraaikIQaawRGylaRkryk<-* +++a++IQ++wRGy+ Rk+++ KIAA0036 422 EKSALIIQKHWRGYRERKNFH 442 //