hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15350749/chunk_1/iprscan-20080501-15350749.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0036 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00015 64.5 1.3e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00015 1/2 327 349 .. 1 23 [] 27.3 0.0021 SM00015 2/2 420 442 .. 1 23 [] 37.2 2.2e-06 Alignments of top-scoring domains: SM00015: domain 1 of 2, from 327 to 349: score 27.3, E = 0.0021 *->rleraAiiIQaawRGylaRkryk<-* +l++aA +IQa+w G++ Rkr k KIAA0036 327 KLHQAACLIQAYWKGFQTRKRLK 349 SM00015: domain 2 of 2, from 420 to 442: score 37.2, E = 2.2e-06 *->rleraAiiIQaawRGylaRkryk<-* +e++A+iIQ++wRGy+ Rk+++ KIAA0036 420 MEEKSALIIQKHWRGYRERKNFH 442 //