hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/shimazu/full/sh/sh02303/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: sh02303 1282 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- EGF Epidermal growth factor-like domain. 382.1 3.4e-110 16 EGF_CA Calcium-binding EGF-like domain 314.8 6e-90 14 NIDO Extracellular domain of unknown function in 105.2 7.4e-27 1 FN3 Fibronectin type 3 domain 101.5 9.8e-26 3 CCP Domain abundant in complement control protei 48.0 1.3e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- NIDO 1/1 1 129 [. 1 185 [] 105.2 7.4e-27 EGF 1/16 140 178 .. 1 32 [] 35.0 9.9e-06 EGF_CA 1/14 141 178 .. 1 34 [] 8.0 0.17 EGF_CA 2/14 180 216 .. 1 34 [] 58.0 1.2e-12 EGF 2/16 183 216 .. 1 32 [] 44.1 1.8e-08 EGF 3/16 221 254 .. 1 32 [] 32.5 5.8e-05 EGF_CA 3/14 222 254 .. 1 34 [] 9.6 0.11 EGF_CA 4/14 256 292 .. 1 34 [] 52.4 5.8e-11 EGF 4/16 259 292 .. 1 32 [] 36.4 3.8e-06 EGF_CA 5/14 300 334 .. 1 34 [] 29.1 0.00042 EGF 5/16 301 334 .. 1 32 [] 41.2 1.3e-07 EGF 6/16 340 369 .. 1 32 [] 12.8 19 EGF 7/16 376 410 .. 1 32 [] -3.0 4.6e+02 EGF_CA 6/14 403 446 .. 1 34 [] 22.6 0.0027 EGF 8/16 413 446 .. 1 32 [] 37.2 2.2e-06 EGF_CA 7/14 453 485 .. 1 34 [] 11.8 0.058 EGF 9/16 452 485 .. 1 32 [] 30.2 0.00028 EGF_CA 8/14 488 524 .. 1 34 [] 36.7 3e-06 EGF 10/16 491 524 .. 1 32 [] 39.9 3.4e-07 EGF_CA 9/14 530 562 .. 1 34 [] 23.6 0.002 EGF 11/16 529 562 .. 1 32 [] 35.7 6.5e-06 CCP 1/1 567 620 .. 1 79 [] 48.0 1.3e-09 EGF 12/16 625 658 .. 1 32 [] 35.2 8.8e-06 EGF_CA 10/14 622 658 .. 1 34 [] 53.5 2.8e-11 EGF_CA 11/14 660 696 .. 1 34 [] 54.6 1.3e-11 EGF 13/16 663 696 .. 1 32 [] 38.1 1.2e-06 EGF 14/16 701 734 .. 1 32 [] 28.4 0.00096 EGF_CA 12/14 698 734 .. 1 34 [] 30.5 0.00022 EGF 15/16 739 772 .. 1 32 [] 21.7 0.1 EGF_CA 13/14 738 772 .. 1 34 [] 8.2 0.16 FN3 1/3 775 860 .. 1 69 [] 24.0 0.021 FN3 2/3 874 956 .. 1 69 [] 32.5 5.9e-05 FN3 3/3 973 1054 .. 1 69 [] 49.6 4.1e-10 EGF 16/16 1179 1212 .. 1 32 [] 36.1 4.9e-06 EGF_CA 14/14 1180 1212 .. 1 34 [] 19.3 0.0068 Alignments of top-scoring domains: NIDO: domain 1 of 1, from 1 to 129: score 105.2, E = 7.4e-27 *->pFwadadtsyadegrGkvyYRedstFTtdpaiLdratedvregftdm edvr +f++ sh02303 1 -------------------------------------EDVRHYFPEL 10 gdeeFraksvvivTWenVaaygaqssliaafdneeggtNTFQavLatdsD +F+a++v+++TW++V+++g+ ss+ ++NTFQ vL+t D sh02303 11 L--DFNATWVFVATWYRVTFFGGSSSS---------PVNTFQTVLIT--D 47 gsrTyAiFlYpslGwtwdt.tagkddrngeggvpArAGFnggdgtflnev g+ +++iF+Y+s+ wt++t+++++++ +g+gg+ A+AGFn+gdg sh02303 48 GKLSFTIFNYESIVWTTGThASSGGNATGLGGIAAQAGFNAGDGQ----- 92 dssytlpasgeeniknLaegSNvHgipGrWlFrvdgaei<-* + +++p+s++ + + + ++Nv g+pGrW+Fr+d+a++ sh02303 93 -RYFSIPGSRTADMAEVETTTNV-GVPGRWAFRIDDAQV 129 EGF: domain 1 of 16, from 140 to 178: score 35.0, E = 9.9e-06 *->eCa...pCsnGgtEqnGtCi........sytC.CpgpGytg.rCe<- C+ +pC nG G+Ci++ ++++sytC+C G+tg+rC sh02303 140 VCLalrPCLNG-----GKCIddcvtgnpSYTCsCL-SGFTGrRCH 178 * sh02303 - - EGF_CA: domain 1 of 14, from 141 to 178: score 8.0, E = 0.17 *->DiDEC....pCqnGGptgtCiN..v...GSYrC.CppGyt.rnCe<- C +pC nGG +Ci++ v+++ SY+C+C G+t+r+C sh02303 141 ----ClalrPCLNGG---KCIDdcVtgnPSYTCsCLSGFTgRRCH 178 * sh02303 - - EGF_CA: domain 2 of 14, from 180 to 216: score 58.0, E = 1.2e-12 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* D++EC ++pCqnGG tC+ +++S+rC+Cp+G+ +++Ce sh02303 180 DVNECasqPCQNGG---TCTHgINSFRCqCPAGFGgPTCE 216 EGF: domain 2 of 16, from 183 to 216: score 44.1, E = 1.8e-08 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* eCa++pC+nG GtC+++ +s++C+Cp +G+ g++Ce sh02303 183 ECAsqPCQNG-----GTCThginSFRCqCP-AGFGGpTCE 216 EGF: domain 3 of 16, from 221 to 254: score 32.5, E = 5.8e-05 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* +C+++ C++G G+C+ +++s C C+ +Gytg Ce sh02303 221 PCDtkECQHG-----GQCQvengSAVCvCQ-AGYTGaACE 254 EGF_CA: domain 3 of 14, from 222 to 254: score 9.6, E = 0.11 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* C+++ Cq+GG +C+ + GS C C++Gyt+ Ce sh02303 222 ----CdtkECQHGG---QCQVeNGSAVCvCQAGYTgAACE 254 EGF_CA: domain 4 of 14, from 256 to 292: score 52.4, E = 5.8e-11 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* D+D+C+++pC nGG C++ vG Y+C C + + + +Ce sh02303 256 DVDDCspdPCLNGG---SCVDlVGNYTClCAEPFKgLRCE 292 EGF: domain 4 of 16, from 259 to 292: score 36.4, E = 3.8e-06 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* +C+++pC nG G C++ + ytC C+ + ++g rCe sh02303 259 DCSpdPCLNG-----GSCVdlvgNYTClCA-EPFKGlRCE 292 EGF_CA: domain 5 of 14, from 300 to 334: score 29.1, E = 0.00042 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* D C + pC+nGG tC++ + +Y C+Cp+G+++ C sh02303 300 --DAClsaPCHNGG---TCVDaDQGYVCeCPEGFMgLDCR 334 [output cut off at A = 10 top alignments] //