TRIM47 ORF clone pFN21AE4176

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE4176

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Clone info.

Species

human

Clone Name

pFN21AE4176 Sequence (with vector) Restriction Map

Product ID

FHC28506

ORF Sequence

DNA sequence (1914 bp)
Protein sequence (638 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE4176

Symbol

TRIM47

Alias : GOA, RNF100

Description

tripartite motif containing 47

Original Clone ID

cp94176

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1914 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 638 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS32737.1 2.4e-133 99.8 TRIM47 CCDS11171.1 2.8e-14 27.9 TRIM16 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR018957 9 57 PF00097 Zinc finger IPR000315 178 217 PF00643 Zinc finger IPR003877 480 565 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 9 57 SM00184 Zinc finger IPR000315 177 217 SM00336 Zinc finger ProfileScan IPR001841 9 58 PS50089 Zinc finger IPR000315 177 217 PS50119 Zinc finger IPR001870 410 631 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_258411 638 611041 99.8 100.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE4176 Download

>KIEE4176  1914 bp
ATGGACGGCAGTGGACCCTTCAGCTGCCCCATCTGCCTAGAGCCACTCCGGGAGCCGGTG
ACGCTGCCCTGCGGCCACAACTTCTGTCTCGCCTGCCTGGGCGCGCTCTGGCCGCATCGT
GGCGCGAGTGGAGCCGGCGGACCCGGAGGCGCGGCCCGCTGCCCGCTGTGCCAGGAGCCC
TTCCCCGACGGCCTTCAGCTCCGCAAGAACCACACGCTGTCCGAGCTGCTGCAGCTCCGC
CAGGGCTCGGGCCCCGGGTCCGGCCCCGGCCCGGCCCCTGCCCTGGCCCCGGAGCCCTCG
GCACCCAGCGCGCTGCCCAGTGTCCCGGAGCCGTCGGCCCCCTGCGCTCCCGAGCCGTGG
CCCGCGGGCGAAGAGCCAGTGCGCTGCGACGCGTGCCCCGAGGGCGCGGCCCTGCCCGCC
GCGCTGTCCTGCCTCTCCTGCCTCGCCTCCTTTTGCCCCGCGCACCTGGGCCCGCACGAG
CGCAGCCCCGCGCTCCGCGGACACCGCCTGGTGCCGCCGCTGCGCCGGCTAGAGGAGAGC
CTGTGCCCGCGCCACCTATGGCCGCTCGAGCGCTACTGCCGCGCGGAGCGCGTGTGTCTG
TGCGAGGCCTGCGCCGCCCAGGAGCACCGCGGCCACGAGCTGGTGCCGCTGGAGCAGGAG
CGCGCGCTTCAGGAGGCTGAGCAGTCCAAAGTCCTGAGCGCCGTGGAGGACCGCATGGAC
GAGCTGGGTGCTGGCATTGCACAGTCCAGGCGCACAGTGGCCCTCATCAAGAGTGCAGCC
GTAGCAGAGCGGGAGAGGGTGAGCCGGCTGTTTGCAGATGCTGCGGCCGCCCTGCAGGGC
TTCCAGACCCAGGTGCTGGGCTTCATCGAGGAGGGGGAAGCTGCCATGCTAGGCCGCTCC
CAGGGTGACCTGCGGCGACAGGAGGAACAGCGCAGCCGCCTGAGCCGAGCCCGCCAGAAT
CTCAGCCAGGTCCCTGAAGCTGACTCAGTCAGCTTCCTGCAGGAGCTGCTGGCACTAAGG
CTGGCCCTGGAGGATGGGTGTGGCCCTGGGCCTGGACCCCCGAGGGAGCTCAGCTTCACC
AAATCATCCCAAGCTGTCCGTGCAGTGAGAGACATGCTGGCCGTGGCCTGCGTCAACCAG
TGGGAGCAGCTGAGGGGGCCGGGTGGCAACGAGGATGGGCCACAGAAGCTGGACTCGGAA
GCTGATGCTGAGCCCCAAGACCTCGAGAGTACGAACCTCTTGGAGAGTGAAGCTCCCAGG
GACTATTTCCTCAAGTTTGCCTATATTGTGGATTTGGACAGCGACACAGCAGACAAGTTC
CTGCAGCTGTTTGGAACCAAAGGTGTCAAGAGGGTGCTGTGTCCTATCAACTACCCCTTG
TCGCCCACCCGCTTCACCCATTGTGAGCAGGTGCTGGGCGAGGGTGCCCTGGACCGAGGC
ACCTACTACTGGGAGGTGGAGATTATCGAGGGCTGGGTCAGCATGGGGGTCATGGCCGAA
GACTTCTCCCCACAAGAGCCCTACGACCGCGGCCGGCTGGGCCGCAACGCCCACTCCTGC
TGCCTGCAGTGGAATGGACGCAGCTTCTCCGTCTGGTTTCATGGGCTGGAGGCTCCCCTG
CCCCACCCCTTCTCGCCCACGGTTGGGGTCTGCCTGGAATACGCTGACCGTGCCTTGGCC
TTCTATGCTGTACGGGACGGCAAGATGAGCCTCCTGCGGAGGCTGAAGGCCTCCCGGCCC
CGCCGGGGTGGCATCCCGGCCTCCCCCATTGACCCCTTCCAGAGCCGCCTGGACAGTCAC
TTTGCGGGGCTCTTCACCCACAGACTCAAGCCTGCCTTCTTCCTGGAGAGTGTGGACGCC
CACTTGCAGATCGGGCCCCTCAAGAAGTCCTGCATATCCGTGCTGAAGAGGAGG

ORF Protein

Cloned ORF protein sequence for pFN21AE4176 Download

>KIEE4176  638 aa
MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRGASGAGGPGGAARCPLCQEP
FPDGLQLRKNHTLSELLQLRQGSGPGSGPGPAPALAPEPSAPSALPSVPEPSAPCAPEPW
PAGEEPVRCDACPEGAALPAALSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEES
LCPRHLWPLERYCRAERVCLCEACAAQEHRGHELVPLEQERALQEAEQSKVLSAVEDRMD
ELGAGIAQSRRTVALIKSAAVAERERVSRLFADAAAALQGFQTQVLGFIEEGEAAMLGRS
QGDLRRQEEQRSRLSRARQNLSQVPEADSVSFLQELLALRLALEDGCGPGPGPPRELSFT
KSSQAVRAVRDMLAVACVNQWEQLRGPGGNEDGPQKLDSEADAEPQDLESTNLLESEAPR
DYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPLSPTRFTHCEQVLGEGALDRG
TYYWEVEIIEGWVSMGVMAEDFSPQEPYDRGRLGRNAHSCCLQWNGRSFSVWFHGLEAPL
PHPFSPTVGVCLEYADRALAFYAVRDGKMSLLRRLKASRPRRGGIPASPIDPFQSRLDSH
FAGLFTHRLKPAFFLESVDAHLQIGPLKKSCISVLKRR

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE4176 Download

>pFN21AE4176  6619 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGACGGCAGTGGACCCTTCAGCTGCCCCATCTG
CCTAGAGCCACTCCGGGAGCCGGTGACGCTGCCCTGCGGCCACAACTTCTGTCTCGCCTG
CCTGGGCGCGCTCTGGCCGCATCGTGGCGCGAGTGGAGCCGGCGGACCCGGAGGCGCGGC
CCGCTGCCCGCTGTGCCAGGAGCCCTTCCCCGACGGCCTTCAGCTCCGCAAGAACCACAC
GCTGTCCGAGCTGCTGCAGCTCCGCCAGGGCTCGGGCCCCGGGTCCGGCCCCGGCCCGGC
CCCTGCCCTGGCCCCGGAGCCCTCGGCACCCAGCGCGCTGCCCAGTGTCCCGGAGCCGTC
GGCCCCCTGCGCTCCCGAGCCGTGGCCCGCGGGCGAAGAGCCAGTGCGCTGCGACGCGTG
CCCCGAGGGCGCGGCCCTGCCCGCCGCGCTGTCCTGCCTCTCCTGCCTCGCCTCCTTTTG
CCCCGCGCACCTGGGCCCGCACGAGCGCAGCCCCGCGCTCCGCGGACACCGCCTGGTGCC
GCCGCTGCGCCGGCTAGAGGAGAGCCTGTGCCCGCGCCACCTATGGCCGCTCGAGCGCTA
CTGCCGCGCGGAGCGCGTGTGTCTGTGCGAGGCCTGCGCCGCCCAGGAGCACCGCGGCCA
CGAGCTGGTGCCGCTGGAGCAGGAGCGCGCGCTTCAGGAGGCTGAGCAGTCCAAAGTCCT
GAGCGCCGTGGAGGACCGCATGGACGAGCTGGGTGCTGGCATTGCACAGTCCAGGCGCAC
AGTGGCCCTCATCAAGAGTGCAGCCGTAGCAGAGCGGGAGAGGGTGAGCCGGCTGTTTGC
AGATGCTGCGGCCGCCCTGCAGGGCTTCCAGACCCAGGTGCTGGGCTTCATCGAGGAGGG
GGAAGCTGCCATGCTAGGCCGCTCCCAGGGTGACCTGCGGCGACAGGAGGAACAGCGCAG
CCGCCTGAGCCGAGCCCGCCAGAATCTCAGCCAGGTCCCTGAAGCTGACTCAGTCAGCTT
CCTGCAGGAGCTGCTGGCACTAAGGCTGGCCCTGGAGGATGGGTGTGGCCCTGGGCCTGG
ACCCCCGAGGGAGCTCAGCTTCACCAAATCATCCCAAGCTGTCCGTGCAGTGAGAGACAT
GCTGGCCGTGGCCTGCGTCAACCAGTGGGAGCAGCTGAGGGGGCCGGGTGGCAACGAGGA
TGGGCCACAGAAGCTGGACTCGGAAGCTGATGCTGAGCCCCAAGACCTCGAGAGTACGAA
CCTCTTGGAGAGTGAAGCTCCCAGGGACTATTTCCTCAAGTTTGCCTATATTGTGGATTT
GGACAGCGACACAGCAGACAAGTTCCTGCAGCTGTTTGGAACCAAAGGTGTCAAGAGGGT
GCTGTGTCCTATCAACTACCCCTTGTCGCCCACCCGCTTCACCCATTGTGAGCAGGTGCT
GGGCGAGGGTGCCCTGGACCGAGGCACCTACTACTGGGAGGTGGAGATTATCGAGGGCTG
GGTCAGCATGGGGGTCATGGCCGAAGACTTCTCCCCACAAGAGCCCTACGACCGCGGCCG
GCTGGGCCGCAACGCCCACTCCTGCTGCCTGCAGTGGAATGGACGCAGCTTCTCCGTCTG
GTTTCATGGGCTGGAGGCTCCCCTGCCCCACCCCTTCTCGCCCACGGTTGGGGTCTGCCT
GGAATACGCTGACCGTGCCTTGGCCTTCTATGCTGTACGGGACGGCAAGATGAGCCTCCT
GCGGAGGCTGAAGGCCTCCCGGCCCCGCCGGGGTGGCATCCCGGCCTCCCCCATTGACCC
CTTCCAGAGCCGCCTGGACAGTCACTTTGCGGGGCTCTTCACCCACAGACTCAAGCCTGC
CTTCTTCCTGGAGAGTGTGGACGCCCACTTGCAGATCGGGCCCCTCAAGAAGTCCTGCAT
ATCCGTGCTGAAGAGGAGGGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGA
GTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGT
TGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCA
GACATGATAAGATACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAA
TGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAAT
AAACAAGTTAACAACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGG
GAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATC
CTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGT
CAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACT
TTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATG
TATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGT
ATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCT
GTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCA
CGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCC
GAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCC
CGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTG
GTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTA
TGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATC
GGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTT
GATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATG
CCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCT
TCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGC
TCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCT
CGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTAC
ACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCC
TCACTGATTAAGCATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAG
CTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACA
TGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTT
TCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGC
GAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCT
CTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCG
TGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCA
AGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACT
ATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTA
ACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTA
ACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCT
TCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTT
TTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGA
TCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCA
TGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGC
ACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATT
AAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTT
ATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGC
CGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCAC
TTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCG
GCGTAGAGGATCGAGATCT