TRIM4 ORF clone pFN21AE4119

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KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE4119

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Clone info.

Species

human

Clone Name

pFN21AE4119 Sequence (with vector) Restriction Map

Product ID

FHC12566

ORF Sequence

DNA sequence (1422 bp)
Protein sequence (474 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE4119

Symbol

TRIM4

Alias : RNF87

Description

tripartite motif containing 4, transcript variant beta

Original Clone ID

cp94119

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1422 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 474 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS5678.1 2.7e-125 100.0 TRIM4 CCDS5679.1 2.7e-85 94.8 TRIM4 CCDS4654.1 3.1e-28 32.9 TRIM27 CCDS31048.1 3.2e-27 39.9 TRIM11 CCDS1571.1 1.5e-25 39.0 TRIM17 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003879 279 296 PR01407 Butyrophylin-like IPR003879 366 379 PR01407 Butyrophylin-like IPR003879 411 435 PR01407 Butyrophylin-like IPR003879 441 459 PR01407 Butyrophylin-like HMMPfam IPR018957 12 52 PF00097 Zinc finger IPR000315 86 123 PF00643 Zinc finger IPR003877 351 461 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 12 52 SM00184 Zinc finger IPR000315 82 123 SM00336 Zinc finger IPR018355 351 471 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 12 53 PS50089 Zinc finger IPR000315 82 123 PS50119 Zinc finger IPR001870 262 474 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_006501 513 602165 32.9 98.9 NP_660215 468 607868 39.9 97.9 XP_016857901 467 607868 39.9 97.9 XP_011542511 477 606123 39.0 98.9 NP_057186 477 606123 39.0 98.9 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE4119 Download

>KIEE4119  1422 bp
ATGGAAGCTGAGGACATCCAGGAGGAGTTGACCTGCCCCATCTGCCTGGACTATTTCCAG
GACCCGGTGTCCATCGAGTGCGGCCACAACTTCTGCCGCGGCTGCCTGCACCGCAACTGG
GCGCCGGGCGGCGGCCCGTTCCCCTGCCCCGAATGTCGGCACCCATCGGCGCCCGCCGCG
CTGCGACCCAACTGGGCCCTGGCCAGGCTGACTGAGAAGACGCAGCGCCGGCGCCTGGGC
CCCGTGCCCCCGGGCCTGTGCGGCCGCCACTGGGAGCCGCTGCGGCTCTTCTGCGAGGAC
GACCAGCGGCCAGTGTGCCTGGTGTGCAGGGAGTCCCAGGAGCACCAGACTCACGCCATG
GCACCCATCGACGAGGCCTTCGAGAGCTACCGGGAGAAACTTCTTAAGTCTCAGCGTAAT
CTCGTGGCCAAGATGAAGAAAGTCATGCATTTACAGGATGTAGAAGTGAAGAACGCCACA
CAGTGGAAGGATAAGATAAAGAGTCAGCGAATGAGAATCAGCACGGAGTTTTCAAAGCTG
CACAACTTCCTGGTTGAAGAAGAGGACCTGTTTCTTCAGAGATTGAACAAAGAAGAAGAA
GAGACGAAGAAGAAGCTGAATGAGAACACGTTAAAACTCAATCAAACTATCGCTTCATTG
AAGAAGCTCATCTTAGAGGTGGGGGAGAAGAGCCAGGCTCCCACCCTGGAGCTGCTTCAG
AATCCAAAAGAAGTGTTGACCAGGAGTGAGATCCAGGATGTGAACTATTCTCTTGAAGCT
GTAAAGGTGAAGACAGTGTGCCAGATACCATTGATGAAGGAAATGCTAAAGCGATTCCAA
GTGGCTGTAAACCTAGCTGAAGACACAGCTCATCCCAAACTCGTCTTCTCCCAGGAAGGG
AGATACGTGAAAAATACAGCATCAGCCAGTTCTTGGCCAGTGTTTTCTTCAGCATGGAAC
TACTTTGCTGGATGGAGGAATCCTCAGAAGACTGCTTTTGTAGAGAGATTTCAGCACTTA
CCCTGTGTTCTGGGAAAAAACGTTTTCACCTCAGGGAAACATTACTGGGAAGTTGAGAGT
AGAGATAGTCTGGAGGTTGCTGTTGGGGTGTGTCGGGAGGACGTCATGGGAATTACTGAT
CGTTCAAAAATGTCCCCAGATGTGGGCATCTGGGCGATTTATTGGAGTGCTGCTGGCTAT
TGGCCCTTGATAGGCTTCCCTGGAACTCCCACCCAGCAAGAGCCAGCTCTCCACCGAGTG
GGGGTTTACCTGGATCGTGGGACTGGGAATGTCTCCTTCTACAGCGCTGTGGACGGAGTG
CACCTGCACACCTTTTCTTGTTCTTCTGTCTCACGCCTCCGGCCATTTTTTTGGTTGAGT
CCATTAGCATCTTTAGTCATTCCACCAGTGACTGATAGGAAA

ORF Protein

Cloned ORF protein sequence for pFN21AE4119 Download

>KIEE4119  474 aa
MEAEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNWAPGGGPFPCPECRHPSAPAA
LRPNWALARLTEKTQRRRLGPVPPGLCGRHWEPLRLFCEDDQRPVCLVCRESQEHQTHAM
APIDEAFESYREKLLKSQRNLVAKMKKVMHLQDVEVKNATQWKDKIKSQRMRISTEFSKL
HNFLVEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIASLKKLILEVGEKSQAPTLELLQ
NPKEVLTRSEIQDVNYSLEAVKVKTVCQIPLMKEMLKRFQVAVNLAEDTAHPKLVFSQEG
RYVKNTASASSWPVFSSAWNYFAGWRNPQKTAFVERFQHLPCVLGKNVFTSGKHYWEVES
RDSLEVAVGVCREDVMGITDRSKMSPDVGIWAIYWSAAGYWPLIGFPGTPTQQEPALHRV
GVYLDRGTGNVSFYSAVDGVHLHTFSCSSVSRLRPFFWLSPLASLVIPPVTDRK

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE4119 Download

>pFN21AE4119  6127 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAAGCTGAGGACATCCAGGAGGAGTTGACCTG
CCCCATCTGCCTGGACTATTTCCAGGACCCGGTGTCCATCGAGTGCGGCCACAACTTCTG
CCGCGGCTGCCTGCACCGCAACTGGGCGCCGGGCGGCGGCCCGTTCCCCTGCCCCGAATG
TCGGCACCCATCGGCGCCCGCCGCGCTGCGACCCAACTGGGCCCTGGCCAGGCTGACTGA
GAAGACGCAGCGCCGGCGCCTGGGCCCCGTGCCCCCGGGCCTGTGCGGCCGCCACTGGGA
GCCGCTGCGGCTCTTCTGCGAGGACGACCAGCGGCCAGTGTGCCTGGTGTGCAGGGAGTC
CCAGGAGCACCAGACTCACGCCATGGCACCCATCGACGAGGCCTTCGAGAGCTACCGGGA
GAAACTTCTTAAGTCTCAGCGTAATCTCGTGGCCAAGATGAAGAAAGTCATGCATTTACA
GGATGTAGAAGTGAAGAACGCCACACAGTGGAAGGATAAGATAAAGAGTCAGCGAATGAG
AATCAGCACGGAGTTTTCAAAGCTGCACAACTTCCTGGTTGAAGAAGAGGACCTGTTTCT
TCAGAGATTGAACAAAGAAGAAGAAGAGACGAAGAAGAAGCTGAATGAGAACACGTTAAA
ACTCAATCAAACTATCGCTTCATTGAAGAAGCTCATCTTAGAGGTGGGGGAGAAGAGCCA
GGCTCCCACCCTGGAGCTGCTTCAGAATCCAAAAGAAGTGTTGACCAGGAGTGAGATCCA
GGATGTGAACTATTCTCTTGAAGCTGTAAAGGTGAAGACAGTGTGCCAGATACCATTGAT
GAAGGAAATGCTAAAGCGATTCCAAGTGGCTGTAAACCTAGCTGAAGACACAGCTCATCC
CAAACTCGTCTTCTCCCAGGAAGGGAGATACGTGAAAAATACAGCATCAGCCAGTTCTTG
GCCAGTGTTTTCTTCAGCATGGAACTACTTTGCTGGATGGAGGAATCCTCAGAAGACTGC
TTTTGTAGAGAGATTTCAGCACTTACCCTGTGTTCTGGGAAAAAACGTTTTCACCTCAGG
GAAACATTACTGGGAAGTTGAGAGTAGAGATAGTCTGGAGGTTGCTGTTGGGGTGTGTCG
GGAGGACGTCATGGGAATTACTGATCGTTCAAAAATGTCCCCAGATGTGGGCATCTGGGC
GATTTATTGGAGTGCTGCTGGCTATTGGCCCTTGATAGGCTTCCCTGGAACTCCCACCCA
GCAAGAGCCAGCTCTCCACCGAGTGGGGGTTTACCTGGATCGTGGGACTGGGAATGTCTC
CTTCTACAGCGCTGTGGACGGAGTGCACCTGCACACCTTTTCTTGTTCTTCTGTCTCACG
CCTCCGGCCATTTTTTTGGTTGAGTCCATTAGCATCTTTAGTCATTCCACCAGTGACTGA
TAGGAAAGTTTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAG
GCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCA
CCGCTGAGCAATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGA
TACATTGATGAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGT
GAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAAC
AACAACAATTGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTA
AGCAAGTAAAACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTT
GCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTC
TGCGGACTGGCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAAT
GTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATG
AGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAA
CATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCAC
CCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTAC
ATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTT
CCAATGATGAGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCC
GGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCA
CCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCC
ATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAG
GAGCTAACCGCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAA
CCGGAGCTGAATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATG
GCAACAACGTTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAA
TTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCG
GCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATT
GCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGT
CAGGCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAG
CATTGGTAATTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGG
CGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAG
GCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCC
GCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAG
GACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGA
CCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTC
ATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTG
TGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGT
CCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCA
GAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACA
CTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAG
TTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCA
AGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGG
GGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAA
AAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGC
CCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAA
TGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGAT
TGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCT
GAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCC
CTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATC
GAGATCT