TRIM60 ORF clone pFN21AE4102

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone pFN21AE4102

How to Order Order Information

Clone info.

Species

human

Clone Name

pFN21AE4102 Sequence (with vector) Restriction Map

Product ID

FHC22091

ORF Sequence

DNA sequence (1413 bp)
Protein sequence (471 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

Gene

KIEE4102

Symbol

TRIM60

Alias : RNF129, RNF33

Description

tripartite motif containing 60, transcript variant 2

Original Clone ID

cp94102

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1413 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 471 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS3808.1 3.2e-128 100.0 TRIM60 CCDS34378.1 1.2e-49 43.1 TRIM39 CCDS78121.1 3.7e-36 42.7 RPP21 CCDS31048.1 3.5e-35 35.6 TRIM11 CCDS1636.1 5.6e-34 35.7 TRIM58 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR003879 293 310 PR01407 Butyrophylin-like IPR003879 310 327 PR01407 Butyrophylin-like IPR003879 332 356 PR01407 Butyrophylin-like IPR003879 362 375 PR01407 Butyrophylin-like IPR003879 406 430 PR01407 Butyrophylin-like IPR003879 436 454 PR01407 Butyrophylin-like HMMPfam IPR018957 16 56 PF00097 Zinc finger IPR000315 93 133 PF00643 Zinc finger IPR003877 347 459 PF00622 SPla/RYanodine receptor SPRY HMMSmart IPR001841 16 56 SM00184 Zinc finger IPR000315 92 133 SM00336 Zinc finger IPR006574 294 346 SM00589 SPRY-associated IPR018355 347 467 SM00449 SPla/RYanodine receptor subgroup ProfileScan IPR001841 16 57 PS50089 Zinc finger IPR000315 92 133 PS50119 Zinc finger IPR001870 277 470 PS50188 B302/SPRY domain
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_742013 488 605700 43.1 98.7 NP_660215 468 607868 35.6 96.8 NP_003132 475 109092 35.7 99.2 NP_060543 485 613184 34.6 98.9 XP_011542512 477 606123 32.2 99.2 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE4102 Download

>KIEE4102  1413 bp
ATGGAGTTTGTGACAGCCCTGGTGAACCTCCAAGAGGAGTCTAGCTGTCCCATCTGTCTG
GAGTACTTGAAAGACCCAGTGACCATCAACTGTGGGCACAACTTCTGTCGCTCCTGCCTC
AGTGTATCCTGGAAGGATCTAGATGATACCTTTCCCTGTCCTGTCTGCCGTTTTTGCTTT
CCATACAAGAGCTTCAGGAGGAACCCCCAGCTCCGTAATTTGACTGAAATTGCTAAACAA
CTCCAGATTAGGAGGAGCAAGAGAAAGAGGCAGAAAGAGAATGCCATGTGTGAAAAACAC
AACCAGTTTCTGACCCTCTTCTGTGTTAAAGATCTAGAGATCTTATGTACACAGTGCAGT
TTCTCCACTAAACACCAGAAGCACTACATTTGCCCTATTAAGAAAGCTGCCTCTTATCAC
AGAGAAATTCTAGAAGGTAGCCTTGAGCCCTTGAGGAATAATATAGAACGAGTTGAAAAA
GTGATAATTCTGCAAGGCAGCAAATCAGTGGAGCTGAAAAAGAAGGTAGAATATAAGAGG
GAAGAAATAAATTCTGAGTTTGAGCAAATAAGATTGTTTTTACAGAATGAACAAGAGATG
ATTCTTAGGCAGATACAAGATGAAGAGATGAACATTTTAGCAAAACTAAATGAAAACCTT
GTAGAACTTTCAGATTATGTTTCCACATTAAAACATCTACTGAGGGAGGTAGAGGGCAAG
TCTGTGCAGTCAAACCTGGAATTACTGACACAAGCTAAGAGTATGCACCACAAGTATCAA
AACCTAAAATGCCCTGAACTCTTTTCATTTAGATTAACAAAATATGGTTTCAGTCTTCCT
CCTCAATATTCTGGCTTGGACAGAATTATCAAGCCATTTCAAGTAGATGTGATTCTAGAT
CTCAACACAGCACATCCTCAACTTCTTGTCTCTGAGGATAGAAAAGCTGTGCGATATGAA
AGAAAAAAACGAAACATTTGTTATGACCCAAGGAGATTTTATGTCTGCCCTGCTGTCCTA
GGCTCTCAGAGATTTAGTTCTGGCCGACATTACTGGGAAGTAGAAGTGGGAAACAAACCT
AAATGGATATTGGGTGTGTGTCAAGACTGTCTTCTTAGGAACTGGCAGGATCAGCCATCA
GTTCTGGGCGGATTCTGGGCAATTGGGCGATACATGAAGAGTGGTTATGTTGCGTCAGGT
CCTAAGACAACCCAGCTTCTGCCAGTAGTAAAACCCAGTAAAATTGGTATTTTTCTGGAC
TATGAATTGGGTGATCTTTCCTTTTATAATATGAATGATAGGTCTATTCTCTATACTTTT
AACGATTGTTTCACAGAAGCCGTTTGGCCTTATTTCTATACTGGAACAGATTCCGAACCT
CTTAAAATCTGCTCAGTATCAGATTCTGAAAGA

ORF Protein

Cloned ORF protein sequence for pFN21AE4102 Download

>KIEE4102  471 aa
MEFVTALVNLQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCF
PYKSFRRNPQLRNLTEIAKQLQIRRSKRKRQKENAMCEKHNQFLTLFCVKDLEILCTQCS
FSTKHQKHYICPIKKAASYHREILEGSLEPLRNNIERVEKVIILQGSKSVELKKKVEYKR
EEINSEFEQIRLFLQNEQEMILRQIQDEEMNILAKLNENLVELSDYVSTLKHLLREVEGK
SVQSNLELLTQAKSMHHKYQNLKCPELFSFRLTKYGFSLPPQYSGLDRIIKPFQVDVILD
LNTAHPQLLVSEDRKAVRYERKKRNICYDPRRFYVCPAVLGSQRFSSGRHYWEVEVGNKP
KWILGVCQDCLLRNWQDQPSVLGGFWAIGRYMKSGYVASGPKTTQLLPVVKPSKIGIFLD
YELGDLSFYNMNDRSILYTFNDCFTEAVWPYFYTGTDSEPLKICSVSDSER

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE4102 Download

>pFN21AE4102  6118 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGGAGTTTGTGACAGCCCTGGTGAACCTCCAAGA
GGAGTCTAGCTGTCCCATCTGTCTGGAGTACTTGAAAGACCCAGTGACCATCAACTGTGG
GCACAACTTCTGTCGCTCCTGCCTCAGTGTATCCTGGAAGGATCTAGATGATACCTTTCC
CTGTCCTGTCTGCCGTTTTTGCTTTCCATACAAGAGCTTCAGGAGGAACCCCCAGCTCCG
TAATTTGACTGAAATTGCTAAACAACTCCAGATTAGGAGGAGCAAGAGAAAGAGGCAGAA
AGAGAATGCCATGTGTGAAAAACACAACCAGTTTCTGACCCTCTTCTGTGTTAAAGATCT
AGAGATCTTATGTACACAGTGCAGTTTCTCCACTAAACACCAGAAGCACTACATTTGCCC
TATTAAGAAAGCTGCCTCTTATCACAGAGAAATTCTAGAAGGTAGCCTTGAGCCCTTGAG
GAATAATATAGAACGAGTTGAAAAAGTGATAATTCTGCAAGGCAGCAAATCAGTGGAGCT
GAAAAAGAAGGTAGAATATAAGAGGGAAGAAATAAATTCTGAGTTTGAGCAAATAAGATT
GTTTTTACAGAATGAACAAGAGATGATTCTTAGGCAGATACAAGATGAAGAGATGAACAT
TTTAGCAAAACTAAATGAAAACCTTGTAGAACTTTCAGATTATGTTTCCACATTAAAACA
TCTACTGAGGGAGGTAGAGGGCAAGTCTGTGCAGTCAAACCTGGAATTACTGACACAAGC
TAAGAGTATGCACCACAAGTATCAAAACCTAAAATGCCCTGAACTCTTTTCATTTAGATT
AACAAAATATGGTTTCAGTCTTCCTCCTCAATATTCTGGCTTGGACAGAATTATCAAGCC
ATTTCAAGTAGATGTGATTCTAGATCTCAACACAGCACATCCTCAACTTCTTGTCTCTGA
GGATAGAAAAGCTGTGCGATATGAAAGAAAAAAACGAAACATTTGTTATGACCCAAGGAG
ATTTTATGTCTGCCCTGCTGTCCTAGGCTCTCAGAGATTTAGTTCTGGCCGACATTACTG
GGAAGTAGAAGTGGGAAACAAACCTAAATGGATATTGGGTGTGTGTCAAGACTGTCTTCT
TAGGAACTGGCAGGATCAGCCATCAGTTCTGGGCGGATTCTGGGCAATTGGGCGATACAT
GAAGAGTGGTTATGTTGCGTCAGGTCCTAAGACAACCCAGCTTCTGCCAGTAGTAAAACC
CAGTAAAATTGGTATTTTTCTGGACTATGAATTGGGTGATCTTTCCTTTTATAATATGAA
TGATAGGTCTATTCTCTATACTTTTAACGATTGTTTCACAGAAGCCGTTTGGCCTTATTT
CTATACTGGAACAGATTCCGAACCTCTTAAAATCTGCTCAGTATCAGATTCTGAAAGAGT
TTAAACGAATTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAG
CTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGC
AATAACTAGCATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGAT
GAGTTTGGACAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGT
GATGCTATTGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAAT
TGCATTCATTTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAA
AACCTCTACAAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCC
CTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTG
GCTTTCTACGTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGA
ACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAA
CCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGT
GTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACG
CTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTG
GATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATG
AGCACTTTCAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAG
CAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACA
GAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATG
AGTGATAACACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACC
GCTTTTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTG
AATGAAGCCATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACG
TTGCGCAAACTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGAC
TGGATGGAGGCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGG
TTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTG
GGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACT
ATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAA
TTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATAC
GGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAA
AGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTG
ACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAA
GATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGC
TTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCAC
GCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAAC
CCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGG
TAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGT
ATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGA
CAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCT
CTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGA
TTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACG
CTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCT
TCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTG
GGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTG
TACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGT
TTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTT
TTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCC
ATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT