SCRT1 ORF clone pFN21AB3860

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Halotag ORF Clone pFN21AB3860

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Clone info.

Species

human

Clone Name

pFN21AB3860 Sequence (with vector) Restriction Map

Product ID

FHC01341

Flexi Clone PID

FXC01341

ORF Sequence

DNA sequence (1044 bp)
Protein sequence (348 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384867]

Gene

KIBB3860

Symbol

SCRT1

Alias : SCRT, ZNF898

Description

scratch family zinc finger 1

Original Clone ID

ak00032

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1044 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 348 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS6421.1 6e-65 99.7 SCRT1 CCDS13006.1 3.5e-26 58.5 SCRT2 CCDS6146.1 1.3e-12 58.0 SNAI2 CCDS32505.1 4.6e-12 49.7 SNAI3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR007087 191 213 PF00096 Zinc finger IPR007087 248 270 PF00096 Zinc finger IPR007087 277 298 PF00096 Zinc finger HMMSmart IPR015880 191 213 SM00355 Zinc finger IPR015880 222 244 SM00355 Zinc finger IPR015880 248 270 SM00355 Zinc finger IPR015880 276 298 SM00355 Zinc finger IPR015880 304 324 SM00355 Zinc finger ProfileScan IPR007087 191 218 PS50157 Zinc finger IPR007087 248 275 PS50157 Zinc finger IPR007087 276 303 PS50157 Zinc finger IPR007087 304 322 PS50157 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_112599 348 605858 99.7 100.0 NP_003566 671 603397 33.0 86.2 XP_006716214 672 603397 33.0 86.2 NP_004211 459 608387 30.8 90.8 NP_001128127 459 608387 30.8 90.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AB3860 Download

>KIBB3860  1044 bp
ATGCCCAGGTCCTTCCTGGTCAAGAAGGTCAAACTTGACGCGTTCTCTTCGGCCGACCTG
GAGAGCGCCTACGGACGCGCCCGCAGCGACCTCGGCGCGCCACTGCACGATAAAGGGTAC
CTCAGCGACTACGTGGGGCCCTCGTCCGTCTACGATGGCGACGCCGAGGCTGCGCTGCTC
AAAGGGCCGTCGCCGGAGCCCATGTACGCAGCAGCTGTGCGTGGAGAGCTGGGTCCGGCG
GCTGCAGGGTCTGCGCCGCCGCCCACCCCGCGCCCGGAGCTGGCCACCGCTGCGGGCGGC
TACATCAACGGCGACGCGGCCGTCAGCGAGGGCTACGCGGCGGACGCCTTCTTCATCACC
GACGGGCGCTCGCGGCGTAAGGCTTCCAATGCCGGCTCTGCCGCCGCTCCCTCCACAGCC
TCGGCGGCGGCCCCCGACGGCGACGCCGGAGGCGGGGGCGGGGCGGGCGGGCGCAGCTTG
GGATCCGGGCCGGGGGGCCGGGGCGGCACGCGCGCGGGGGCAGGCACCGAGGCGCGCGCG
GGGCCAGGGGCCGCAGGTGCTGGCGGCCGGCACGCGTGCGGCGAGTGCGGCAAAACATAC
GCCACGTCGTCGAACCTGAGCCGCCACAAGCAGACGCACCGCAGCCTGGACAGCCAGCTG
GCGCGGCGCTGCCCGACGTGCGGCAAGGTGTACGTGTCCATGCCGGCCATGGCCATGCAC
CTGCTCACGCACGACCTGCGCCACAAGTGCGGCGTGTGCGGCAAAGCCTTCTCGCGGCCC
TGGCTGCTGCAGGGCCACATGCGCTCGCACACCGGCGAGAAACCCTTCGGCTGCGCGCAC
TGCGGCAAGGCCTTCGCCGACCGCTCCAACCTGCGCGCGCACATGCAGACGCATTCGGCC
TTCAAGCACTTCCAGTGCAAGCGCTGCAAGAAGAGCTTCGCGCTCAAGTCCTATCTCAAC
AAGCACTACGAGTCGGCCTGCTTCAAGGGCGGCGCCGGAGGCCCCGCGGCTCCTGCGCCG
CCACAGCTCAGCCCTGTGCAGGCC

ORF Protein

Cloned ORF protein sequence for pFN21AB3860 Download

>KIBB3860  348 aa
MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL
KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT
DGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA
GPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH
LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA
FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AB3860 Download

>pFN21AB3860  5749 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGCCCAGGTCCTTCCTGGTCAAGAAGGTCAAACT
TGACGCGTTCTCTTCGGCCGACCTGGAGAGCGCCTACGGACGCGCCCGCAGCGACCTCGG
CGCGCCACTGCACGATAAAGGGTACCTCAGCGACTACGTGGGGCCCTCGTCCGTCTACGA
TGGCGACGCCGAGGCTGCGCTGCTCAAAGGGCCGTCGCCGGAGCCCATGTACGCAGCAGC
TGTGCGTGGAGAGCTGGGTCCGGCGGCTGCAGGGTCTGCGCCGCCGCCCACCCCGCGCCC
GGAGCTGGCCACCGCTGCGGGCGGCTACATCAACGGCGACGCGGCCGTCAGCGAGGGCTA
CGCGGCGGACGCCTTCTTCATCACCGACGGGCGCTCGCGGCGTAAGGCTTCCAATGCCGG
CTCTGCCGCCGCTCCCTCCACAGCCTCGGCGGCGGCCCCCGACGGCGACGCCGGAGGCGG
GGGCGGGGCGGGCGGGCGCAGCTTGGGATCCGGGCCGGGGGGCCGGGGCGGCACGCGCGC
GGGGGCAGGCACCGAGGCGCGCGCGGGGCCAGGGGCCGCAGGTGCTGGCGGCCGGCACGC
GTGCGGCGAGTGCGGCAAAACATACGCCACGTCGTCGAACCTGAGCCGCCACAAGCAGAC
GCACCGCAGCCTGGACAGCCAGCTGGCGCGGCGCTGCCCGACGTGCGGCAAGGTGTACGT
GTCCATGCCGGCCATGGCCATGCACCTGCTCACGCACGACCTGCGCCACAAGTGCGGCGT
GTGCGGCAAAGCCTTCTCGCGGCCCTGGCTGCTGCAGGGCCACATGCGCTCGCACACCGG
CGAGAAACCCTTCGGCTGCGCGCACTGCGGCAAGGCCTTCGCCGACCGCTCCAACCTGCG
CGCGCACATGCAGACGCATTCGGCCTTCAAGCACTTCCAGTGCAAGCGCTGCAAGAAGAG
CTTCGCGCTCAAGTCCTATCTCAACAAGCACTACGAGTCGGCCTGCTTCAAGGGCGGCGC
CGGAGGCCCCGCGGCTCCTGCGCCGCCACAGCTCAGCCCTGTGCAGGCCGTTTAAACGAA
TTCGGGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGG
CTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAG
CATAACCCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGA
CAAACCACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATT
GCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCAT
TTTATGTTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTAC
AAATGTGGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAG
ATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTAC
GTAATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATT
TGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAA
ATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTT
ATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAA
GTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAAC
AGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTC
AAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGT
CGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCAT
CTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAAC
ACTGCGGCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTG
CACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCC
ATACCAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAA
CTATTAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAG
GCGGATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCT
GATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGAT
GGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAA
CGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATG
ACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCA
CAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGA
ACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATC
ACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGG
CGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGAT
ACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGT
ATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTC
AGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACG
ACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCG
GTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTG
GTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCG
GCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCA
GAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGA
ACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGA
TCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGA
AACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTG
GTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGT
GGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTG
CGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATA
AACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT