SCRT1 ORF clone FXC01341

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Flexi ORF Clone FXC01341

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Clone info.

Species

human

Clone Name

pF1KB3860 Sequence (with vector) Restriction Map

Product ID

FXC01341

HaloTag Clone PID

FHC01341

ORF Sequence

DNA sequence (1044 bp)
Protein sequence (348 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384867]

Gene

KIBB3860

Symbol

SCRT1

Alias : SCRT, ZNF898

Description

scratch family zinc finger 1

Original Clone ID

ak00032

Features of the cloned ORF sequence

Description

Length: 1044 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 348 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS6421.1 6e-65 99.7 SCRT1 CCDS13006.1 3.5e-26 58.5 SCRT2 CCDS6146.1 1.3e-12 58.0 SNAI2 CCDS32505.1 4.6e-12 49.7 SNAI3 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR007087 191 213 PF00096 Zinc finger IPR007087 248 270 PF00096 Zinc finger IPR007087 277 298 PF00096 Zinc finger HMMSmart IPR015880 191 213 SM00355 Zinc finger IPR015880 222 244 SM00355 Zinc finger IPR015880 248 270 SM00355 Zinc finger IPR015880 276 298 SM00355 Zinc finger IPR015880 304 324 SM00355 Zinc finger ProfileScan IPR007087 191 218 PS50157 Zinc finger IPR007087 248 275 PS50157 Zinc finger IPR007087 276 303 PS50157 Zinc finger IPR007087 304 322 PS50157 Zinc finger
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_112599 348 605858 99.7 100.0 NP_003566 671 603397 33.0 86.2 XP_006716214 672 603397 33.0 86.2 NP_004211 459 608387 30.8 90.8 NP_001128127 459 608387 30.8 90.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB3860 Download

>KIBB3860  1044 bp
ATGCCCAGGTCCTTCCTGGTCAAGAAGGTCAAACTTGACGCGTTCTCTTCGGCCGACCTG
GAGAGCGCCTACGGACGCGCCCGCAGCGACCTCGGCGCGCCACTGCACGATAAAGGGTAC
CTCAGCGACTACGTGGGGCCCTCGTCCGTCTACGATGGCGACGCCGAGGCTGCGCTGCTC
AAAGGGCCGTCGCCGGAGCCCATGTACGCAGCAGCTGTGCGTGGAGAGCTGGGTCCGGCG
GCTGCAGGGTCTGCGCCGCCGCCCACCCCGCGCCCGGAGCTGGCCACCGCTGCGGGCGGC
TACATCAACGGCGACGCGGCCGTCAGCGAGGGCTACGCGGCGGACGCCTTCTTCATCACC
GACGGGCGCTCGCGGCGTAAGGCTTCCAATGCCGGCTCTGCCGCCGCTCCCTCCACAGCC
TCGGCGGCGGCCCCCGACGGCGACGCCGGAGGCGGGGGCGGGGCGGGCGGGCGCAGCTTG
GGATCCGGGCCGGGGGGCCGGGGCGGCACGCGCGCGGGGGCAGGCACCGAGGCGCGCGCG
GGGCCAGGGGCCGCAGGTGCTGGCGGCCGGCACGCGTGCGGCGAGTGCGGCAAAACATAC
GCCACGTCGTCGAACCTGAGCCGCCACAAGCAGACGCACCGCAGCCTGGACAGCCAGCTG
GCGCGGCGCTGCCCGACGTGCGGCAAGGTGTACGTGTCCATGCCGGCCATGGCCATGCAC
CTGCTCACGCACGACCTGCGCCACAAGTGCGGCGTGTGCGGCAAAGCCTTCTCGCGGCCC
TGGCTGCTGCAGGGCCACATGCGCTCGCACACCGGCGAGAAACCCTTCGGCTGCGCGCAC
TGCGGCAAGGCCTTCGCCGACCGCTCCAACCTGCGCGCGCACATGCAGACGCATTCGGCC
TTCAAGCACTTCCAGTGCAAGCGCTGCAAGAAGAGCTTCGCGCTCAAGTCCTATCTCAAC
AAGCACTACGAGTCGGCCTGCTTCAAGGGCGGCGCCGGAGGCCCCGCGGCTCCTGCGCCG
CCACAGCTCAGCCCTGTGCAGGCC

ORF Protein

Cloned ORF protein sequence for pF1KB3860 Download

>KIBB3860  348 aa
MPRSFLVKKVKLDAFSSADLESAYGRARSDLGAPLHDKGYLSDYVGPSSVYDGDAEAALL
KGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEGYAADAFFIT
DGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARA
GPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLDSQLARRCPTCGKVYVSMPAMAMH
LLTHDLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSA
FKHFQCKRCKKSFALKSYLNKHYESACFKGGAGGPAAPAPPQLSPVQA

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB3860 Download

>pF1KB3860  4157 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCCCAGGTCC
TTCCTGGTCAAGAAGGTCAAACTTGACGCGTTCTCTTCGGCCGACCTGGAGAGCGCCTAC
GGACGCGCCCGCAGCGACCTCGGCGCGCCACTGCACGATAAAGGGTACCTCAGCGACTAC
GTGGGGCCCTCGTCCGTCTACGATGGCGACGCCGAGGCTGCGCTGCTCAAAGGGCCGTCG
CCGGAGCCCATGTACGCAGCAGCTGTGCGTGGAGAGCTGGGTCCGGCGGCTGCAGGGTCT
GCGCCGCCGCCCACCCCGCGCCCGGAGCTGGCCACCGCTGCGGGCGGCTACATCAACGGC
GACGCGGCCGTCAGCGAGGGCTACGCGGCGGACGCCTTCTTCATCACCGACGGGCGCTCG
CGGCGTAAGGCTTCCAATGCCGGCTCTGCCGCCGCTCCCTCCACAGCCTCGGCGGCGGCC
CCCGACGGCGACGCCGGAGGCGGGGGCGGGGCGGGCGGGCGCAGCTTGGGATCCGGGCCG
GGGGGCCGGGGCGGCACGCGCGCGGGGGCAGGCACCGAGGCGCGCGCGGGGCCAGGGGCC
GCAGGTGCTGGCGGCCGGCACGCGTGCGGCGAGTGCGGCAAAACATACGCCACGTCGTCG
AACCTGAGCCGCCACAAGCAGACGCACCGCAGCCTGGACAGCCAGCTGGCGCGGCGCTGC
CCGACGTGCGGCAAGGTGTACGTGTCCATGCCGGCCATGGCCATGCACCTGCTCACGCAC
GACCTGCGCCACAAGTGCGGCGTGTGCGGCAAAGCCTTCTCGCGGCCCTGGCTGCTGCAG
GGCCACATGCGCTCGCACACCGGCGAGAAACCCTTCGGCTGCGCGCACTGCGGCAAGGCC
TTCGCCGACCGCTCCAACCTGCGCGCGCACATGCAGACGCATTCGGCCTTCAAGCACTTC
CAGTGCAAGCGCTGCAAGAAGAGCTTCGCGCTCAAGTCCTATCTCAACAAGCACTACGAG
TCGGCCTGCTTCAAGGGCGGCGCCGGAGGCCCCGCGGCTCCTGCGCCGCCACAGCTCAGC
CCTGTGCAGGCCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACC
TGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGC
TGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGG
TTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTC
TAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTC
CCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACT
GGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCG
TGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAA
GTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGAT
CAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCT
CCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGC
TCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACC
GACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCC
ACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGG
CTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAG
AAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGC
CCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGT
CTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTC
GCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCC
TGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGG
CTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAG
CTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCG
CAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCG
AAATGACCGACCAAGCGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTT
TGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCC
CGTAGAAAAGATCAAAGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTT
GCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAAC
TCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGT
GTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCT
GCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGA
CTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCAC
ACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATG
AGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGT
CGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCC
TGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCG
GAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCC
TTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGC
CTTTGAGTGAGCTGATACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGAT
GGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACC
CTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTT
CGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAG
CGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCG
AGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAG
CCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGG
CAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGC
CGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAC
GAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTC
TCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAG
GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCC
TGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCA
AATATGTATCCGCTCAT