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SpecieshumanProduct IDFXC03592Cloning SiteSgfI-PmeIGeneKIBB6162SymbolKCND1
Alias : KV4.1Descriptionpotassium channel, voltage gated Shal related subfamily D, member 1Original Clone IDcs00762
Length: 1941 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 647 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS14314.1 0 100.0 KCND1 CCDS5776.1 1.3e-145 67.3 KCND2 CCDS844.1 1.5e-143 65.8 KCND3 CCDS843.1 8.9e-129 64.0 KCND3 CCDS13418.1 2.3e-44 31.3 KCNB1
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR003975 67 80 PR01497 Potassium channel IPR004054 74 83 PR01516 Potassium channel IPR003091 81 100 PR00169 Voltage-dependent potassium channel IPR003968 81 91 PR01491 Potassium channel IPR003975 142 158 PR01497 Potassium channel IPR004054 149 160 PR01516 Potassium channel IPR003975 162 176 PR01497 Potassium channel IPR003091 179 207 PR00169 Voltage-dependent potassium channel IPR003975 181 195 PR01497 Potassium channel IPR003975 222 238 PR01497 Potassium channel IPR003091 233 256 PR00169 Voltage-dependent potassium channel IPR003091 259 279 PR00169 Voltage-dependent potassium channel IPR003091 296 322 PR00169 Voltage-dependent potassium channel IPR003968 301 309 PR01491 Potassium channel IPR003975 320 339 PR01497 Potassium channel IPR003091 325 348 PR00169 Voltage-dependent potassium channel IPR003968 325 339 PR01491 Potassium channel IPR003091 356 378 PR00169 Voltage-dependent potassium channel IPR003091 385 411 PR00169 Voltage-dependent potassium channel IPR003968 396 407 PR01491 Potassium channel IPR003975 417 428 PR01497 Potassium channel IPR003975 431 447 PR01497 Potassium channel IPR004054 448 459 PR01516 Potassium channel IPR004054 461 477 PR01516 Potassium channel IPR003975 475 489 PR01497 Potassium channel IPR004054 554 566 PR01516 Potassium channel IPR004054 581 594 PR01516 Potassium channel IPR004054 613 624 PR01516 Potassium channel IPR004054 633 647 PR01516 Potassium channel HMMPfam IPR021645 3 31 PF11601 Shal-type voltage-gated potassium channels IPR003131 43 131 PF02214 Potassium channel IPR005821 234 407 PF00520 Ion transport NULL 447 550 PF11879 NULL HMMSmart IPR000210 40 139 SM00225 BTB/POZ-like
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 7 TWLPFARAAAVGWLPLAQQPLPP 29 SECONDARY 23 2 185 ALVFYYVTGFFIAVSVIANVVET 207 PRIMARY 23 3 229 QAFFCMDTACVLIFTGEYLLRLF 251 SECONDARY 23 4 259 FLRSVMSLIDVVAILPYYIGLLV 281 PRIMARY 23 5 323 ASELGFLLFSLTMAIIIFATVMF 345 PRIMARY 23 6 356 FTSIPAAFWYTIVTMTTLGYGDM 378 SECONDARY 23 7 388 FGSICSLSGVLVIALPVPVIVSN 410 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004970 647 300281 100.0 100.0 XP_011542212 647 300281 100.0 100.0 XP_016884997 558 300281 100.0 86.2 XP_016884998 558 300281 100.0 86.2 NP_036413 630 605410 67.3 97.7 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB6162 Download>KIBB6162 1941 bp ATGGCGGCAGGCCTGGCCACGTGGCTGCCTTTTGCTCGGGCAGCAGCAGTGGGCTGGCTG CCCCTGGCCCAGCAACCCCTGCCCCCGGCACCGGGGGTGAAGGCATCTCGAGGAGATGAG GTTCTGGTGGTGAACGTGAGCGGACGGCGCTTTGAGACTTGGAAGAATACGCTGGACCGC TACCCAGACACCTTGCTGGGCAGCTCGGAGAAGGAATTCTTCTACGATGCTGACTCAGGC GAGTACTTCTTCGATCGCGACCCTGACATGTTCCGCCATGTGCTGAACTTCTACCGAACG GGGCGGCTGCATTGCCCACGGCAGGAGTGCATCCAGGCCTTCGACGAAGAGCTGGCTTTC TACGGCCTGGTTCCCGAGCTAGTCGGTGACTGCTGCCTTGAAGAGTATCGGGACCGAAAG AAGGAGAATGCCGAGCGCCTGGCAGAGGATGAGGAGGCAGAGCAGGCCGGGGACGGCCCA GCCCTGCCAGCAGGCAGCTCCCTGCGGCAGCGGCTCTGGCGGGCCTTCGAGAATCCACAC ACGAGCACCGCAGCCCTCGTTTTCTACTATGTGACCGGCTTCTTCATCGCCGTGTCGGTC ATCGCCAATGTGGTGGAGACCATCCCATGCCGCGGCTCTGCACGCAGGTCCTCAAGGGAG CAGCCCTGTGGCGAACGCTTCCCACAGGCCTTTTTCTGCATGGACACAGCCTGTGTACTC ATATTCACAGGTGAATACCTCCTGCGGCTGTTTGCCGCCCCCAGCCGTTGCCGCTTCCTG CGGAGTGTCATGAGCCTCATCGACGTGGTGGCCATCCTGCCCTACTACATTGGGCTTTTG GTGCCCAAGAACGACGATGTCTCTGGCGCCTTTGTCACCCTGCGTGTGTTCCGGGTGTTT CGCATCTTCAAGTTCTCCAGGCACTCACAGGGCTTGAGGATTCTGGGCTACACACTCAAG AGCTGTGCCTCTGAGCTGGGCTTTCTCCTCTTTTCCCTAACCATGGCCATCATCATCTTT GCCACTGTCATGTTTTATGCTGAGAAGGGCACAAACAAGACCAACTTTACAAGCATCCCT GCGGCCTTCTGGTATACCATTGTCACCATGACCACGCTTGGCTACGGAGACATGGTGCCC AGCACCATTGCTGGCAAGATTTTCGGGTCCATCTGCTCACTCAGTGGCGTCTTGGTCATT GCCCTGCCTGTGCCAGTCATTGTGTCCAACTTTAGCCGCATCTACCACCAGAACCAGCGG GCTGACAAGCGCCGAGCACAGCAGAAGGTGCGCTTGGCAAGGATCCGATTGGCAAAGAGT GGTACCACCAATGCCTTCCTGCAGTACAAGCAGAATGGGGGCCTTGAGGACAGCGGCAGT GGCGAGGAACAGGCTCTTTGTGTCAGGAACCGTTCTGCCTTTGAACAGCAACATCACCAC TTGCTGCACTGTCTAGAGAAGACAACGTGCCATGAGTTCACAGATGAGCTCACCTTCAGT GAAGCCCTGGGAGCCGTCTCGCCGGGTGGCCGCACCAGCCGTAGCACCTCTGTGTCTTCC CAGCCAGTGGGACCCGGAAGCCTGCTGTCTTCTTGCTGCCCTCGCAGGGCCAAGCGCCGC GCCATCCGCCTTGCCAACTCCACTGCCTCAGTCAGCCGTGGCAGCATGCAGGAGCTGGAC ATGCTGGCAGGGCTGCGCAGGAGCCATGCCCCTCAGAGCCGCTCCAGCCTCAATGCCAAG CCCCATGACAGCCTTGACCTGAACTGCGACAGCCGGGACTTCGTGGCTGCCATTATCAGC ATCCCTACCCCTCCTGCCAACACCCCAGATGAGAGCCAACCTTCCTCCCCTGGCGGCGGT GGCAGGGCCGGCAGCACCCTCAGGAACTCCAGCCTGGGTACCCCTTGCCTCTTCCCCGAG ACTGTCAAGATCTCATCCCTG
Cloned ORF protein sequence for pF1KB6162 Download>KIBB6162 647 aa MAAGLATWLPFARAAAVGWLPLAQQPLPPAPGVKASRGDEVLVVNVSGRRFETWKNTLDR YPDTLLGSSEKEFFYDADSGEYFFDRDPDMFRHVLNFYRTGRLHCPRQECIQAFDEELAF YGLVPELVGDCCLEEYRDRKKENAERLAEDEEAEQAGDGPALPAGSSLRQRLWRAFENPH TSTAALVFYYVTGFFIAVSVIANVVETIPCRGSARRSSREQPCGERFPQAFFCMDTACVL IFTGEYLLRLFAAPSRCRFLRSVMSLIDVVAILPYYIGLLVPKNDDVSGAFVTLRVFRVF RIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGTNKTNFTSIP AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQR ADKRRAQQKVRLARIRLAKSGTTNAFLQYKQNGGLEDSGSGEEQALCVRNRSAFEQQHHH LLHCLEKTTCHEFTDELTFSEALGAVSPGGRTSRSTSVSSQPVGPGSLLSSCCPRRAKRR AIRLANSTASVSRGSMQELDMLAGLRRSHAPQSRSSLNAKPHDSLDLNCDSRDFVAAIIS IPTPPANTPDESQPSSPGGGGRAGSTLRNSSLGTPCLFPETVKISSL
Nucleotide Sequence (with vector) for pF1KB6162 Download>pF1KB6162 5054 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGCGGCAGGC CTGGCCACGTGGCTGCCTTTTGCTCGGGCAGCAGCAGTGGGCTGGCTGCCCCTGGCCCAG CAACCCCTGCCCCCGGCACCGGGGGTGAAGGCATCTCGAGGAGATGAGGTTCTGGTGGTG AACGTGAGCGGACGGCGCTTTGAGACTTGGAAGAATACGCTGGACCGCTACCCAGACACC TTGCTGGGCAGCTCGGAGAAGGAATTCTTCTACGATGCTGACTCAGGCGAGTACTTCTTC GATCGCGACCCTGACATGTTCCGCCATGTGCTGAACTTCTACCGAACGGGGCGGCTGCAT TGCCCACGGCAGGAGTGCATCCAGGCCTTCGACGAAGAGCTGGCTTTCTACGGCCTGGTT CCCGAGCTAGTCGGTGACTGCTGCCTTGAAGAGTATCGGGACCGAAAGAAGGAGAATGCC GAGCGCCTGGCAGAGGATGAGGAGGCAGAGCAGGCCGGGGACGGCCCAGCCCTGCCAGCA GGCAGCTCCCTGCGGCAGCGGCTCTGGCGGGCCTTCGAGAATCCACACACGAGCACCGCA GCCCTCGTTTTCTACTATGTGACCGGCTTCTTCATCGCCGTGTCGGTCATCGCCAATGTG GTGGAGACCATCCCATGCCGCGGCTCTGCACGCAGGTCCTCAAGGGAGCAGCCCTGTGGC GAACGCTTCCCACAGGCCTTTTTCTGCATGGACACAGCCTGTGTACTCATATTCACAGGT GAATACCTCCTGCGGCTGTTTGCCGCCCCCAGCCGTTGCCGCTTCCTGCGGAGTGTCATG AGCCTCATCGACGTGGTGGCCATCCTGCCCTACTACATTGGGCTTTTGGTGCCCAAGAAC GACGATGTCTCTGGCGCCTTTGTCACCCTGCGTGTGTTCCGGGTGTTTCGCATCTTCAAG TTCTCCAGGCACTCACAGGGCTTGAGGATTCTGGGCTACACACTCAAGAGCTGTGCCTCT GAGCTGGGCTTTCTCCTCTTTTCCCTAACCATGGCCATCATCATCTTTGCCACTGTCATG TTTTATGCTGAGAAGGGCACAAACAAGACCAACTTTACAAGCATCCCTGCGGCCTTCTGG TATACCATTGTCACCATGACCACGCTTGGCTACGGAGACATGGTGCCCAGCACCATTGCT GGCAAGATTTTCGGGTCCATCTGCTCACTCAGTGGCGTCTTGGTCATTGCCCTGCCTGTG CCAGTCATTGTGTCCAACTTTAGCCGCATCTACCACCAGAACCAGCGGGCTGACAAGCGC CGAGCACAGCAGAAGGTGCGCTTGGCAAGGATCCGATTGGCAAAGAGTGGTACCACCAAT GCCTTCCTGCAGTACAAGCAGAATGGGGGCCTTGAGGACAGCGGCAGTGGCGAGGAACAG GCTCTTTGTGTCAGGAACCGTTCTGCCTTTGAACAGCAACATCACCACTTGCTGCACTGT CTAGAGAAGACAACGTGCCATGAGTTCACAGATGAGCTCACCTTCAGTGAAGCCCTGGGA GCCGTCTCGCCGGGTGGCCGCACCAGCCGTAGCACCTCTGTGTCTTCCCAGCCAGTGGGA CCCGGAAGCCTGCTGTCTTCTTGCTGCCCTCGCAGGGCCAAGCGCCGCGCCATCCGCCTT GCCAACTCCACTGCCTCAGTCAGCCGTGGCAGCATGCAGGAGCTGGACATGCTGGCAGGG CTGCGCAGGAGCCATGCCCCTCAGAGCCGCTCCAGCCTCAATGCCAAGCCCCATGACAGC CTTGACCTGAACTGCGACAGCCGGGACTTCGTGGCTGCCATTATCAGCATCCCTACCCCT CCTGCCAACACCCCAGATGAGAGCCAACCTTCCTCCCCTGGCGGCGGTGGCAGGGCCGGC AGCACCCTCAGGAACTCCAGCCTGGGTACCCCTTGCCTCTTCCCCGAGACTGTCAAGATC TCATCCCTGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGC AGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGC CACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTT TTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAG CTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCT TGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGC TTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGA GCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTA AACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAA GAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCG GCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCT GATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGAC CTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACG ACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTG CTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAA GTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCA TTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTT GTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCC AGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGC TTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTG GGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTT GGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAG CGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAA TGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATC CACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAG GAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCA TCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCA GGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGG ATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAG GTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGT TCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACA CGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGG CGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATT TGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATC CGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCG CAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTG GAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTA GATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGT GAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTC TGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGG GTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGG TGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGA TAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCT GATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAG TAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGA TGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAA AGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCC TGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGT GGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGA CGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAAT ATGTATCCGCTCAT
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