SGSM3 ORF clone FXC03383

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Flexi ORF Clone FXC03383

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Clone info.

Species

human

Clone Name

pF1KF0006 Sequence (with vector) Restriction Map

Product ID

FXC03383

HaloTag Clone PID

FHC03383

ORF Sequence

DNA sequence (2247 bp)
Protein sequence (749 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1K Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB463265]

Gene

FLJ00006

Symbol

SGSM3

Alias : CIP85, MAP, RABGAP5, RUSC3, RUTBC3, RabGAP-5, rabGAPLP

Description

small G protein signaling modulator 3, transcript variant 1

Original Clone ID

oc00002

Features of the cloned ORF sequence

Description

Length: 2247 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 749 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS14002.1 0 100.0 SGSM3 CCDS45314.1 5.5e-29 34.4 TBC1D2B CCDS32301.2 2.7e-28 35.8 TBC1D2B CCDS59137.1 2.2e-27 33.3 TBC1D2 CCDS75865.1 3.8e-27 33.3 TBC1D2 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR000195 119 324 PF00566 Rab-GAP/TBC domain IPR001452 486 531 PF00018 Src homology-3 domain IPR004012 563 716 PF02759 RUN HMMSmart IPR000195 111 328 SM00164 Rab-GAP/TBC domain IPR001452 483 538 SM00326 Src homology-3 domain IPR004012 654 716 SM00593 RUN ProfileScan IPR000195 114 305 PS50086 Rab-GAP/TBC domain IPR001452 480 539 PS50002 Src homology-3 domain IPR004012 555 718 PS50826 RUN
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_056520 749 610440 100.0 100.0 XP_005261631 739 610440 100.0 96.7 XP_016884265 682 610440 100.0 91.1 XP_016884264 686 610440 99.9 90.4 XP_011528464 686 610440 99.9 90.4 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KF0006 Download

>FLJ00006  2247 bp
ATGTCAGGAAGCCATACACCTGCCTGTGGCCCTTTCTCAGCCCTGACTCCGAGCATATGG
CCCCAGGAGATCTTGGCCAAGTACACGCAGAAGGAAGAGTCAGCAGAGCAACCAGAGTTC
TACTACGATGAGTTTGGTTTCCGTGTGTACAAGGAAGAAGGTGATGAGCCTGGCTCCAGT
CTGCTGGCGAACTCCCCTCTGATGGAGGATGCTCCACAGAGGCTGCGGTGGCAGGCCCAC
CTGGAGTTCACCCATAACCACGATGTGGGGGATCTCACCTGGGACAAGATTGCCGTCTCC
CTACCCCGCTCTGAGAAGCTCCGCTCCCTGGTGCTGGCCGGCATCCCACATGGCATGAGG
CCACAGCTGTGGATGCGGCTCTCTGGGGCCCTGCAGAAGAAGAGGAACTCTGAGCTGTCC
TACCGCGAGATTGTGAAGAACAGCTCCAACGATGAGACCATCGCTGCCAAGCAGATCGAG
AAGGACCTGCTCCGCACCATGCCCAGCAACGCCTGCTTCGCCAGCATGGGTAGCATCGGG
GTGCCCCGCCTGCGCAGGGTGCTCCGGGCCCTGGCCTGGCTCTACCCAGAGATCGGCTAC
TGCCAGGGCACCGGCATGGTGGCCGCCTGCCTCCTGCTGTTCCTGGAGGAGGAGGACGCC
TTCTGGATGATGTCTGCCATCATCGAGGACCTGCTCCCCGCCTCCTACTTCAGCACCACC
CTGCTGGGTGTCCAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCAGTACCTGCCT
CGCCTGGACAAGCTGCTCCAGGAGCATGACATTGAGCTGTCCCTGATCACACTGCACTGG
TTCCTCACGGCCTTCGCCAGCGTGGTGGACATCAAGCTGCTCCTGCGCATCTGGGACCTG
TTTTTCTACGAGGGCTCCCGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCTCAAG
GAGGAAGAGCTGATCCAGTCAGAGAACTCGGCCTCCATCTTCAACACGCTATCGGATATC
CCGTCGCAGATGGAGGACGCGGAGCTGCTTCTGGGGGTGGCCATGCGGCTGGCCGGCTCC
CTCACCGATGTGGCCGTGGAGACTCAGCGCCGCAAGCACCTGGCCTATCTCATTGCAGAC
CAGGGCCAGCTCCTGGGGGCCGGCACCCTCACCAACCTCTCTCAGGTTGTTCGCCGCAGG
ACCCAGCGGAGGAAGTCCACCATCACTGCTCTGCTCTTCGGGGAGGATGACCTGGAGGCA
CTCAAGGCCAAGAACATCAAGCAGACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTG
CGCGTGGCACGCCACTTCCAGTGCACAGACCCCAAAAACTGCAGCGTGGAGCTGACTCCA
GACTATAGCATGGAGAGCCACCAGCGGGACCACGAGAACTACGTGGCGTGCTCACGCAGC
CACCGGCGCCGAGCCAAGGCCCTGCTGGACTTTGAGCGGCACGACGACGACGAGCTGGGC
TTCCGCAAGAACGACATCATCACAATCGTGTCTCAGAAGGACGAGCACTGCTGGGTGGGG
GAGCTCAACGGCCTGCGAGGCTGGTTTCCAGCCAAGTTCGTGGAAGTCCTGGATGAGCGC
AGCAAAGAGTACTCCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCACAGACCTCGTG
CGAGGGACCCTCTGCCCGGCCCTTAAGGCCCTGTTCGAACATGGACTGAAGAAGCCATCC
CTGCTTGGGGGCGCCTGCCACCCCTGGCTGTTTATCGAGGAGGCTGCAGGCCGGGAGGTC
GAGAGAGACTTTGCCTCCGTGTATTCCCGTCTGGTGCTCTGTAAGACCTTCAGGTTGGAT
GAAGATGGCAAAGTCCTGACCCCGGAGGAGCTGCTCTACCGGGCTGTGCAGTCTGTGAAC
GTGACCCACGATGCAGTGCATGCACAAATGGATGTGAAGCTCCGCTCACTGATCTGCGTG
GGGCTCAATGAGCAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGCTCCAGCCTGCCCACC
GTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTGCGCAGCCCGGGCTGGGTCCAGATCAAG
TGTGAGCTCCGAGTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCT
GCGAAGAGAGAGGCGCAGCAGCCCCTGAAGGAGGGCGTCCGGGACATGCTGGTGAAGCAC
CACCTCTTCAGCTGGGATGTGGACGGG

ORF Protein

Cloned ORF protein sequence for pF1KF0006 Download

>FLJ00006  749 aa
MSGSHTPACGPFSALTPSIWPQEILAKYTQKEESAEQPEFYYDEFGFRVYKEEGDEPGSS
LLANSPLMEDAPQRLRWQAHLEFTHNHDVGDLTWDKIAVSLPRSEKLRSLVLAGIPHGMR
PQLWMRLSGALQKKRNSELSYREIVKNSSNDETIAAKQIEKDLLRTMPSNACFASMGSIG
VPRLRRVLRALAWLYPEIGYCQGTGMVAACLLLFLEEEDAFWMMSAIIEDLLPASYFSTT
LLGVQTDQRVLRHLIVQYLPRLDKLLQEHDIELSLITLHWFLTAFASVVDIKLLLRIWDL
FFYEGSRVLFQLTLGMLHLKEEELIQSENSASIFNTLSDIPSQMEDAELLLGVAMRLAGS
LTDVAVETQRRKHLAYLIADQGQLLGAGTLTNLSQVVRRRTQRRKSTITALLFGEDDLEA
LKAKNIKQTELVADLREAILRVARHFQCTDPKNCSVELTPDYSMESHQRDHENYVACSRS
HRRRAKALLDFERHDDDELGFRKNDIITIVSQKDEHCWVGELNGLRGWFPAKFVEVLDER
SKEYSIAGDDSVTEGVTDLVRGTLCPALKALFEHGLKKPSLLGGACHPWLFIEEAAGREV
ERDFASVYSRLVLCKTFRLDEDGKVLTPEELLYRAVQSVNVTHDAVHAQMDVKLRSLICV
GLNEQVLHLWLEVLCSSLPTVEKWYQPWSFLRSPGWVQIKCELRVLCCFAFSLSQDWELP
AKREAQQPLKEGVRDMLVKHHLFSWDVDG

ORF+Vector

Nucleotide Sequence (with vector) for pF1KF0006 Download

>pF1KF0006  5360 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTCAGGAAGC
CATACACCTGCCTGTGGCCCTTTCTCAGCCCTGACTCCGAGCATATGGCCCCAGGAGATC
TTGGCCAAGTACACGCAGAAGGAAGAGTCAGCAGAGCAACCAGAGTTCTACTACGATGAG
TTTGGTTTCCGTGTGTACAAGGAAGAAGGTGATGAGCCTGGCTCCAGTCTGCTGGCGAAC
TCCCCTCTGATGGAGGATGCTCCACAGAGGCTGCGGTGGCAGGCCCACCTGGAGTTCACC
CATAACCACGATGTGGGGGATCTCACCTGGGACAAGATTGCCGTCTCCCTACCCCGCTCT
GAGAAGCTCCGCTCCCTGGTGCTGGCCGGCATCCCACATGGCATGAGGCCACAGCTGTGG
ATGCGGCTCTCTGGGGCCCTGCAGAAGAAGAGGAACTCTGAGCTGTCCTACCGCGAGATT
GTGAAGAACAGCTCCAACGATGAGACCATCGCTGCCAAGCAGATCGAGAAGGACCTGCTC
CGCACCATGCCCAGCAACGCCTGCTTCGCCAGCATGGGTAGCATCGGGGTGCCCCGCCTG
CGCAGGGTGCTCCGGGCCCTGGCCTGGCTCTACCCAGAGATCGGCTACTGCCAGGGCACC
GGCATGGTGGCCGCCTGCCTCCTGCTGTTCCTGGAGGAGGAGGACGCCTTCTGGATGATG
TCTGCCATCATCGAGGACCTGCTCCCCGCCTCCTACTTCAGCACCACCCTGCTGGGTGTC
CAGACTGACCAGCGGGTCCTGCGCCACCTCATTGTCCAGTACCTGCCTCGCCTGGACAAG
CTGCTCCAGGAGCATGACATTGAGCTGTCCCTGATCACACTGCACTGGTTCCTCACGGCC
TTCGCCAGCGTGGTGGACATCAAGCTGCTCCTGCGCATCTGGGACCTGTTTTTCTACGAG
GGCTCCCGGGTGCTGTTCCAGCTCACGCTGGGCATGCTGCACCTCAAGGAGGAAGAGCTG
ATCCAGTCAGAGAACTCGGCCTCCATCTTCAACACGCTATCGGATATCCCGTCGCAGATG
GAGGACGCGGAGCTGCTTCTGGGGGTGGCCATGCGGCTGGCCGGCTCCCTCACCGATGTG
GCCGTGGAGACTCAGCGCCGCAAGCACCTGGCCTATCTCATTGCAGACCAGGGCCAGCTC
CTGGGGGCCGGCACCCTCACCAACCTCTCTCAGGTTGTTCGCCGCAGGACCCAGCGGAGG
AAGTCCACCATCACTGCTCTGCTCTTCGGGGAGGATGACCTGGAGGCACTCAAGGCCAAG
AACATCAAGCAGACGGAACTGGTGGCTGACCTCCGGGAAGCCATCCTGCGCGTGGCACGC
CACTTCCAGTGCACAGACCCCAAAAACTGCAGCGTGGAGCTGACTCCAGACTATAGCATG
GAGAGCCACCAGCGGGACCACGAGAACTACGTGGCGTGCTCACGCAGCCACCGGCGCCGA
GCCAAGGCCCTGCTGGACTTTGAGCGGCACGACGACGACGAGCTGGGCTTCCGCAAGAAC
GACATCATCACAATCGTGTCTCAGAAGGACGAGCACTGCTGGGTGGGGGAGCTCAACGGC
CTGCGAGGCTGGTTTCCAGCCAAGTTCGTGGAAGTCCTGGATGAGCGCAGCAAAGAGTAC
TCCATCGCGGGGGATGACTCGGTGACGGAGGGGGTCACAGACCTCGTGCGAGGGACCCTC
TGCCCGGCCCTTAAGGCCCTGTTCGAACATGGACTGAAGAAGCCATCCCTGCTTGGGGGC
GCCTGCCACCCCTGGCTGTTTATCGAGGAGGCTGCAGGCCGGGAGGTCGAGAGAGACTTT
GCCTCCGTGTATTCCCGTCTGGTGCTCTGTAAGACCTTCAGGTTGGATGAAGATGGCAAA
GTCCTGACCCCGGAGGAGCTGCTCTACCGGGCTGTGCAGTCTGTGAACGTGACCCACGAT
GCAGTGCATGCACAAATGGATGTGAAGCTCCGCTCACTGATCTGCGTGGGGCTCAATGAG
CAGGTGCTGCACCTGTGGCTGGAGGTGCTCTGCTCCAGCCTGCCCACCGTGGAGAAGTGG
TACCAGCCCTGGTCCTTCCTGCGCAGCCCGGGCTGGGTCCAGATCAAGTGTGAGCTCCGA
GTCCTCTGCTGCTTTGCCTTCAGCCTCTCCCAGGACTGGGAGCTCCCTGCGAAGAGAGAG
GCGCAGCAGCCCCTGAAGGAGGGCGTCCGGGACATGCTGGTGAAGCACCACCTCTTCAGC
TGGGATGTGGACGGGGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCG
ACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGC
TGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAG
GGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCA
GTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTT
TTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGG
ACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCA
GCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGC
AAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCT
GATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGT
TCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGC
TGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAG
ACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTG
GCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGAC
TGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCC
GAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACC
TGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCC
GGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTG
TTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGAT
GCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGC
CGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAA
GAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGAT
TCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGT
TCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACG
GTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAA
GGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGA
CGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAG
ATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCT
TACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACG
CTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACC
CCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGT
AAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTA
TGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGAC
AGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTC
TTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGAT
TACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGC
TCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTT
CACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGG
GATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGT
ACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTT
TTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTT
TAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCA
TCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTT
CAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGG
CGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAG
CGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAA
AACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACG
CTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCG
GAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCA
TCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACAT
TCAAATATGTATCCGCTCAT